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Sample GSM1509788 Query DataSets for GSM1509788
Status Public on Mar 01, 2015
Title iPGC-1β/APCmin 11
Sample type RNA
 
Source name mouse ileum tumor 11
Organism Mus musculus
Characteristics strain: FVB/N
age: 3-4 months old
tissue: ileum tumor
genotype/variation: iPGC-1β/APCmin
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the Qiazol reagent, following manufacturer's instructions. Quality control was performed with Biorad Experion.
Label biotin
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalization (background was not subtracted) with Illumina Genome Studio Software; items with detection p values >0.001 or AVG Signal <200 were excluded. Data were analyzed with Genome Studio Software (Differential Expression Analysis with Mann-Whitney error model plus False Discovery Rate, FDR).
 
Submission date Sep 22, 2014
Last update date Mar 01, 2015
Contact name Elena Bellafante
E-mail(s) elena.bellafante@kcl.ac.uk
Organization name KCL
Department Women's Health
Lab Fetal and Maternal Disease
Street address Guy's Campus
City London
ZIP/Postal code SE11UL
Country United Kingdom
 
Platform ID GPL6885
Series (2)
GSE61642 Genome-wide analysis expression of ileum tumor samples from FVBN/APCmin and iPGC-1β/APCmin
GSE61643 PGC-1β Promotes Enterocyte Lifespan and Tumorigenesis in the Intestine

Data table header descriptions
ID_REF
VALUE Quantile Normalized AVG signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2995.7 0
ILMN_2721178 975.8 0
ILMN_3033922 1290 0
ILMN_3092673 4678.1 0
ILMN_2816356 135.5 0.37594
ILMN_2808939 1320.1 0
ILMN_2634564 488.6 0
ILMN_2737647 146.6 0.12281
ILMN_2734484 954.8 0
ILMN_2952292 381.5 0
ILMN_2699078 149.4 0.09649
ILMN_1213681 629.3 0
ILMN_2735413 143.3 0.17794
ILMN_2735415 134.5 0.40476
ILMN_2891688 2614.6 0
ILMN_2637698 1731.8 0
ILMN_2674228 416.6 0
ILMN_2601546 134.1 0.42732
ILMN_1230831 129.6 0.59774
ILMN_2848071 850.8 0

Total number of rows: 25697

Table truncated, full table size 612 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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