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Sample GSM151378 Query DataSets for GSM151378
Status Public on Dec 01, 2007
Title Control Patient C10
Sample type RNA
 
Channel 1
Source name Neutrophil
Organism Homo sapiens
Characteristics Control Patient

Biomaterial provider Nepean Hospital Intensive Care Unit
Extracted molecule total RNA
Extraction protocol RiboPure-Blood kit (AmbionTM)
Label Cy5
Label protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
 
Channel 2
Source name Cell line
Organism Homo sapiens
Characteristics Universal Human Reference RNA
Biomaterial provider Stratagene
Extracted molecule total RNA
Extraction protocol not applicable
Label Cy3
Label protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
 
 
Hybridization protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
Scan protocol GenePix 4000B laser scanner and GenePix software (Axon Instruments)
Description none
Data processing Background subtraction followed by Lowess print-tip group Normalization, include genes which have 1. at least 80% of expression data with 2 fold change in either direction from the gene's median value, (2) at least 50% of expression data non-missing
 
Submission date Dec 14, 2006
Last update date Oct 09, 2007
Contact name Benjamin Man Piu Tang
E-mail(s) benjamin@clubsalsa.com.au
Phone 61415614883
Organization name Nepean Hospital
Department Intensive Care Medicine
Street address 12/29 Cook Street
City Glebe
State/province NSW
ZIP/Postal code 2037
Country Australia
 
Platform ID GPL4274
Series (1)
GSE6535 Critically ill patients with either gram-positive sepsis or gram-negative sepsis

Data table header descriptions
ID_REF
VALUE normalized log (cy5/cy3)

Data table
ID_REF VALUE
AB000464 -0.741245508
AB000509 -1.074451685
AB000520 1.740282536
AB000895 1.008995414
AB001328 0.895189703
AB001451 -1.142658234
AB002282 -3.051871061
AB002293 -0.384951681
AB002296 -0.011998721
AB002297 -0.556890845
AB002298 0.241598785
AB002299 0.571973681
AB002301 -0.99757272
AB002304 0.060601633
AB002306 0.291059911
AB002308 0.314973384
AB002313 -0.157124579
AB002314 0.54386133
AB002316 -0.294249058
AB002318 -0.997954667

Total number of rows: 18664

Table truncated, full table size 394 Kbytes.




Supplementary file Size Download File type/resource
GSM151378.gpr.gz 2.1 Mb (ftp)(http) GPR

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