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Sample GSM151379 Query DataSets for GSM151379
Status Public on Dec 01, 2007
Title Control Patient C11
Sample type RNA
 
Channel 1
Source name Neutrophil
Organism Homo sapiens
Characteristics Control Patient

Biomaterial provider Nepean Hospital Intensive Care Unit
Extracted molecule total RNA
Extraction protocol RiboPure-Blood kit (AmbionTM)
Label Cy5
Label protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
 
Channel 2
Source name Cell line
Organism Homo sapiens
Characteristics Universal Human Reference RNA
Biomaterial provider Stratagene
Extracted molecule total RNA
Extraction protocol not applicable
Label Cy3
Label protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
 
 
Hybridization protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
Scan protocol GenePix 4000B laser scanner and GenePix software (Axon Instruments)
Description none
Data processing Background subtraction followed by Lowess print-tip group Normalization, include genes which have 1. at least 80% of expression data with 2 fold change in either direction from the gene's median value, (2) at least 50% of expression data non-missing
 
Submission date Dec 14, 2006
Last update date Oct 09, 2007
Contact name Benjamin Man Piu Tang
E-mail(s) benjamin@clubsalsa.com.au
Phone 61415614883
Organization name Nepean Hospital
Department Intensive Care Medicine
Street address 12/29 Cook Street
City Glebe
State/province NSW
ZIP/Postal code 2037
Country Australia
 
Platform ID GPL4274
Series (1)
GSE6535 Critically ill patients with either gram-positive sepsis or gram-negative sepsis

Data table header descriptions
ID_REF
VALUE normalized log (cy5/cy3)

Data table
ID_REF VALUE
AB000464 0.341579467
AB000509 0.206993505
AB000520 1.5507195
AB000895 1.357043982
AB001328 0.078333639
AB001451 -1.14532125
AB002282 -2.211703777
AB002293 -1.09753406
AB002296 0.651707768
AB002297 1.734462857
AB002298 0.299205691
AB002299 -0.693222821
AB002301 -0.07505326
AB002304 0.53591007
AB002306 -0.448570162
AB002308 -0.775521755
AB002313 -0.648676395
AB002314 -0.446503043
AB002316 -0.503754914
AB002318 -0.431028306

Total number of rows: 18664

Table truncated, full table size 395 Kbytes.




Supplementary file Size Download File type/resource
GSM151379.gpr.gz 2.1 Mb (ftp)(http) GPR

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