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Sample GSM151380 Query DataSets for GSM151380
Status Public on Dec 01, 2007
Title Control Patient C12
Sample type RNA
 
Channel 1
Source name Neutrophil
Organism Homo sapiens
Characteristics Control Patient

Biomaterial provider Nepean Hospital Intensive Care Unit
Extracted molecule total RNA
Extraction protocol RiboPure-Blood kit (AmbionTM)
Label Cy5
Label protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
 
Channel 2
Source name Cell line
Organism Homo sapiens
Characteristics Universal Human Reference RNA
Biomaterial provider Stratagene
Extracted molecule total RNA
Extraction protocol not applicable
Label Cy3
Label protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
 
 
Hybridization protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
Scan protocol GenePix 4000B laser scanner and GenePix software (Axon Instruments)
Description none
Data processing Background subtraction followed by Lowess print-tip group Normalization, include genes which have 1. at least 80% of expression data with 2 fold change in either direction from the gene's median value, (2) at least 50% of expression data non-missing
 
Submission date Dec 14, 2006
Last update date Oct 09, 2007
Contact name Benjamin Man Piu Tang
E-mail(s) benjamin@clubsalsa.com.au
Phone 61415614883
Organization name Nepean Hospital
Department Intensive Care Medicine
Street address 12/29 Cook Street
City Glebe
State/province NSW
ZIP/Postal code 2037
Country Australia
 
Platform ID GPL4274
Series (1)
GSE6535 Critically ill patients with either gram-positive sepsis or gram-negative sepsis

Data table header descriptions
ID_REF
VALUE normalized log (cy5/cy3)

Data table
ID_REF VALUE
AB000464 -0.267549932
AB000509 0.244519383
AB000520 1.726696372
AB000895 0.359428316
AB001328 0.674227417
AB001451 -2.009170055
AB002282 -0.377629757
AB002293 -0.386322975
AB002296 -0.701178312
AB002297 1.80956924
AB002298 1.304715633
AB002299 0.584308803
AB002301 -1.537393212
AB002304 -0.008464509
AB002306 -1.217209339
AB002308 -0.895056605
AB002313 -0.048668187
AB002314 -0.072839119
AB002316 -0.468026817
AB002318 0.320199519

Total number of rows: 18664

Table truncated, full table size 391 Kbytes.




Supplementary file Size Download File type/resource
GSM151380.gpr.gz 2.1 Mb (ftp)(http) GPR

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