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Sample GSM151397 Query DataSets for GSM151397
Status Public on Dec 01, 2007
Title Sepsis Patient M12
Sample type RNA
 
Channel 1
Source name Neutrophil
Organism Homo sapiens
Characteristics Sepsis Patient
Infection type: Mixed
Biomaterial provider Nepean Hospital Intensive Care Unit
Extracted molecule total RNA
Extraction protocol RiboPure-Blood kit (AmbionTM)
Label Cy5
Label protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
 
Channel 2
Source name Cell line
Organism Homo sapiens
Characteristics Universal Human Reference RNA
Biomaterial provider Stratagene
Extracted molecule total RNA
Extraction protocol not applicable
Label Cy3
Label protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
 
 
Hybridization protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
Scan protocol GenePix 4000B laser scanner and GenePix software (Axon Instruments)
Description none
Data processing Background subtraction followed by Lowess print-tip group Normalization, include genes which have 1. at least 80% of expression data with 2 fold change in either direction from the gene's median value, (2) at least 50% of expression data non-missing
 
Submission date Dec 14, 2006
Last update date Oct 09, 2007
Contact name Benjamin Man Piu Tang
E-mail(s) benjamin@clubsalsa.com.au
Phone 61415614883
Organization name Nepean Hospital
Department Intensive Care Medicine
Street address 12/29 Cook Street
City Glebe
State/province NSW
ZIP/Postal code 2037
Country Australia
 
Platform ID GPL4274
Series (1)
GSE6535 Critically ill patients with either gram-positive sepsis or gram-negative sepsis

Data table header descriptions
ID_REF
VALUE normalized log (cy5/cy3)

Data table
ID_REF VALUE
AB000464 0.352815568
AB000509 -0.253577203
AB000520 2.24454999
AB000895 -1.461656928
AB001328 -0.020652797
AB001451 -0.586591065
AB002282 0.257974774
AB002293 1.730869174
AB002296 -0.042159587
AB002297 0.302690685
AB002298 -1.152910352
AB002299 -1.21649611
AB002301 1.387166858
AB002304 1.366887212
AB002306 0.075884201
AB002308 -0.705433786
AB002313 -0.092017412
AB002314 -0.137045488
AB002316 -0.047094166
AB002318 -0.505699396

Total number of rows: 18664

Table truncated, full table size 395 Kbytes.




Supplementary file Size Download File type/resource
GSM151397.gpr.gz 2.0 Mb (ftp)(http) GPR

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