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Sample GSM151413 Query DataSets for GSM151413
Status Public on Dec 01, 2007
Title Sepsis Patient N16
Sample type RNA
 
Channel 1
Source name Neutrophil
Organism Homo sapiens
Characteristics Sepsis Patient
Infection type: Gram-Negative
Biomaterial provider Nepean Hospital Intensive Care Unit
Extracted molecule total RNA
Extraction protocol RiboPure-Blood kit (AmbionTM)
Label Cy5
Label protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
 
Channel 2
Source name Cell line
Organism Homo sapiens
Characteristics Universal Human Reference RNA
Biomaterial provider Stratagene
Extracted molecule total RNA
Extraction protocol not applicable
Label Cy3
Label protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
 
 
Hybridization protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
Scan protocol GenePix 4000B laser scanner and GenePix software (Axon Instruments)
Description none
Data processing Background subtraction followed by Lowess print-tip group Normalization, include genes which have 1. at least 80% of expression data with 2 fold change in either direction from the gene's median value, (2) at least 50% of expression data non-missing
 
Submission date Dec 14, 2006
Last update date Oct 09, 2007
Contact name Benjamin Man Piu Tang
E-mail(s) benjamin@clubsalsa.com.au
Phone 61415614883
Organization name Nepean Hospital
Department Intensive Care Medicine
Street address 12/29 Cook Street
City Glebe
State/province NSW
ZIP/Postal code 2037
Country Australia
 
Platform ID GPL4274
Series (1)
GSE6535 Critically ill patients with either gram-positive sepsis or gram-negative sepsis

Data table header descriptions
ID_REF
VALUE normalized log (cy5/cy3)

Data table
ID_REF VALUE
AB000464 -0.282906622
AB000509 -0.605237782
AB000520 1.189555049
AB000895 0.724238217
AB001328 -0.988656759
AB001451 -0.611889601
AB002282 0.92097944
AB002293 -1.925769448
AB002296 1.147866726
AB002297 -0.102949508
AB002298 -0.319329768
AB002299 -0.202622399
AB002301 0.448892504
AB002304 1.543894291
AB002306 0.618862987
AB002308 0.231829435
AB002313 0.318675518
AB002314 -0.587692082
AB002316 0.311805993
AB002318 -1.040165901

Total number of rows: 18664

Table truncated, full table size 395 Kbytes.




Supplementary file Size Download File type/resource
GSM151413.gpr.gz 2.1 Mb (ftp)(http) GPR

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