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Sample GSM151434 Query DataSets for GSM151434
Status Public on Dec 01, 2007
Title Sepsis Patient P12
Sample type RNA
 
Channel 1
Source name Neutrophil
Organism Homo sapiens
Characteristics Sepsis Patient
Infection type: Gram-Positive
Biomaterial provider Nepean Hospital Intensive Care Unit
Extracted molecule total RNA
Extraction protocol RiboPure-Blood kit (AmbionTM)
Label Cy5
Label protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
 
Channel 2
Source name Cell line
Organism Homo sapiens
Characteristics Universal Human Reference RNA
Biomaterial provider Stratagene
Extracted molecule total RNA
Extraction protocol not applicable
Label Cy3
Label protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
 
 
Hybridization protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
Scan protocol GenePix 4000B laser scanner and GenePix software (Axon Instruments)
Description none
Data processing Background subtraction followed by Lowess print-tip group Normalization, include genes which have 1. at least 80% of expression data with 2 fold change in either direction from the gene's median value, (2) at least 50% of expression data non-missing
 
Submission date Dec 14, 2006
Last update date Oct 09, 2007
Contact name Benjamin Man Piu Tang
E-mail(s) benjamin@clubsalsa.com.au
Phone 61415614883
Organization name Nepean Hospital
Department Intensive Care Medicine
Street address 12/29 Cook Street
City Glebe
State/province NSW
ZIP/Postal code 2037
Country Australia
 
Platform ID GPL4274
Series (1)
GSE6535 Critically ill patients with either gram-positive sepsis or gram-negative sepsis

Data table header descriptions
ID_REF
VALUE normalized log (cy5/cy3)

Data table
ID_REF VALUE
AB000464 -0.258485258
AB000509 -0.116145998
AB000520 1.648073077
AB000895 -0.509269178
AB001328 -1.213205338
AB001451 -0.598066986
AB002282 -2.124159098
AB002293 -0.801547945
AB002296 0.181350112
AB002297 -0.99307394
AB002298 0.250237048
AB002299 -0.451387882
AB002301 0.019149328
AB002304 0.31392777
AB002306 -0.778951585
AB002308 -0.385816664
AB002313 -0.564677417
AB002314 -1.253810048
AB002316 -0.150703862
AB002318 -0.605213404

Total number of rows: 18664

Table truncated, full table size 395 Kbytes.




Supplementary file Size Download File type/resource
GSM151434.gpr.gz 2.0 Mb (ftp)(http) GPR

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