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Sample GSM1515758 Query DataSets for GSM1515758
Status Public on Mar 25, 2015
Title BM_MSCs-RAEB-rep3
Sample type RNA
 
Source name Bone marrow mesenchymal stromal cells (BM MSCs), RAEB
Organism Homo sapiens
Characteristics cell type: bone marrow mesenchymal stromal cells
diagnosis: MDS (RAEB-1)
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol and purified with Qiagen RNeasy columns according to the manufacturers' protocols. Quality control was performed with Agilent 2100 Bioanalyzer.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion Illumina RNA amplification kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Bone marrow mesenchymal stromal cells (BM MSCs) from RAEB group
Data processing The data were normalised using quantile normalisation with lumi R package
 
Submission date Sep 29, 2014
Last update date Mar 25, 2015
Contact name Seungwoo Hwang
E-mail(s) swhwang10@yahoo.com
Phone 82-42-879-8544
Organization name Korea Research Institute of Bioscience and Biotechnology
Department Korean Bioinformation Center
Street address 52 Eoeun-dong Yuseong-gu
City Daejeon
ZIP/Postal code 305-806
Country South Korea
 
Platform ID GPL10558
Series (1)
GSE61853 Gene expression analysis of bone marrow mesenchymal stromal cells from myelodysplastic syndrome (MDS) patients and normal controls

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 187.811278571429 0.138961
ILMN_2055271 199.783835714286 0.07792208
ILMN_1736007 183.914728571429 0.1714286
ILMN_2383229 121.388257142857 0.7857143
ILMN_1806310 152.6001 0.5181818
ILMN_1779670 147.267078571429 0.5844156
ILMN_1653355 245.219178571429 0.002597403
ILMN_1717783 95.0491328571429 0.9727273
ILMN_1705025 182.593764285714 0.1805195
ILMN_1814316 171.393421428571 0.2922078
ILMN_2359168 116.688828571429 0.8194805
ILMN_1731507 92.798205 0.9844156
ILMN_1787689 154.461442857143 0.4922078
ILMN_3241953 270.377328571429 0
ILMN_1745607 164.683421428571 0.3792208
ILMN_2136495 103.080741428571 0.9181818
ILMN_1668111 159.776978571429 0.4298701
ILMN_2295559 163.386814285714 0.3935065
ILMN_1735045 798.405107142857 0
ILMN_1680754 163.313307142857 0.3935065

Total number of rows: 47323

Table truncated, full table size 1708 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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