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Sample GSM1515759 Query DataSets for GSM1515759
Status Public on Mar 25, 2015
Title BM_MSCs-RAEB-rep4
Sample type RNA
 
Source name Bone marrow mesenchymal stromal cells (BM MSCs), RAEB
Organism Homo sapiens
Characteristics cell type: bone marrow mesenchymal stromal cells
diagnosis: MDS (RAEB-2)
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol and purified with Qiagen RNeasy columns according to the manufacturers' protocols. Quality control was performed with Agilent 2100 Bioanalyzer.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion Illumina RNA amplification kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Bone marrow mesenchymal stromal cells (BM MSCs) from RAEB group
Data processing The data were normalised using quantile normalisation with lumi R package
 
Submission date Sep 29, 2014
Last update date Mar 25, 2015
Contact name Seungwoo Hwang
E-mail(s) swhwang10@yahoo.com
Phone 82-42-879-8544
Organization name Korea Research Institute of Bioscience and Biotechnology
Department Korean Bioinformation Center
Street address 52 Eoeun-dong Yuseong-gu
City Daejeon
ZIP/Postal code 305-806
Country South Korea
 
Platform ID GPL10558
Series (1)
GSE61853 Gene expression analysis of bone marrow mesenchymal stromal cells from myelodysplastic syndrome (MDS) patients and normal controls

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 200.950257142857 0.1103896
ILMN_2055271 193.349171428571 0.1597403
ILMN_1736007 177.252157142857 0.2779221
ILMN_2383229 155.006642857143 0.525974
ILMN_1806310 159.276528571429 0.4675325
ILMN_1779670 110.741305714286 0.8714285
ILMN_1653355 207.068514285714 0.08831169
ILMN_1717783 107.238086428571 0.8948052
ILMN_1705025 214.14855 0.07012987
ILMN_1814316 149.775064285714 0.5831169
ILMN_2359168 119.517335714286 0.8064935
ILMN_1731507 121.593957142857 0.7909091
ILMN_1787689 130.429907142857 0.7376623
ILMN_3241953 142.916621428571 0.6506494
ILMN_1745607 653.887028571429 0
ILMN_2136495 99.8959414285714 0.951948
ILMN_1668111 166.499464285714 0.3844156
ILMN_2295559 175.14295 0.3012987
ILMN_1735045 811.708964285714 0
ILMN_1680754 149.267992857143 0.5883117

Total number of rows: 47323

Table truncated, full table size 1758 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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