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Sample GSM1527306 Query DataSets for GSM1527306
Status Public on Mar 18, 2015
Title TMD8-DMSO-3
Sample type RNA
Source name TMD8 cell lines treated with DMSO
Organism Homo sapiens
Characteristics cell line: TMD8
cell type: lymphoma cell line
treated with: DMSO
Treatment protocol treatment with pan-histone deacetylase inhibitor (HDACi), a thioacetate-ω (γ-lactam amide) derivative.
Growth protocol in vitro
Extracted molecule total RNA
Extraction protocol RNA extraction was performed using a commercially available kit (RNeasy, Qiagen, Frederick,MD) according to the manufactures’ recommendations. RNA quality was confirmed based on a RNA integrity number >8 by use of an electrophoresis bioanalyzer (2100 Agilent Bioanalyser).
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep RNA Amplification Kit for Illumina arrays
Hybridization protocol Whole Genome Gene Expression Direct Hybridization
Scan protocol Illumina HiScan
Description 9373549084_E
Data processing Signal calculated by GenomeStudio Data Analysis Software’s Gene Expression Module (GSGX) Version 1.5.4 (Illumina, Inc.)
The data were normalised using quantile method
Submission date Oct 17, 2014
Last update date Mar 18, 2015
Contact name Francesco Bertoni
Phone +41 91 820 0367
Organization name IOR
Department Lymphoma & Genomics Research Program
Street address Via V. Vela 6
City Bellinzona
State/province Ticino
ZIP/Postal code 6500
Country Switzerland
Platform ID GPL10558
Series (1)
GSE62460 Preclinical antitumor activity of ST7612AA1: a novel second generation oral histone deacetylase (HDAC) inhibitor

Data table header descriptions
VALUE Log2 Normalized Data

Data table
ILMN_1762337 6.5877616
ILMN_2055271 6.80032227
ILMN_1736007 6.867754737
ILMN_2383229 6.541916936
ILMN_1806310 6.663163006
ILMN_1779670 6.59678383
ILMN_1653355 6.563859806
ILMN_1717783 6.468810423
ILMN_1705025 6.575862843
ILMN_1814316 6.671022032
ILMN_2359168 6.501324347
ILMN_1731507 6.487081
ILMN_1787689 6.666833887
ILMN_3241953 9.205356163
ILMN_1745607 6.482544229
ILMN_2136495 6.581905926
ILMN_1668111 6.523362413
ILMN_2295559 6.578864015
ILMN_1735045 6.547524311
ILMN_1680754 6.626118182

Total number of rows: 47231

Table truncated, full table size 1147 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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