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Sample GSM1527307 Query DataSets for GSM1527307
Status Public on Mar 18, 2015
Title TMD8-ST-7612-1
Sample type RNA
 
Source name TMD8 cell lines treated with ST7612AA1
Organism Homo sapiens
Characteristics cell line: TMD8
cell type: lymphoma cell line
treated with: ST7612AA1
Treatment protocol treatment with pan-histone deacetylase inhibitor (HDACi), a thioacetate-ω (γ-lactam amide) derivative.
Growth protocol in vitro
Extracted molecule total RNA
Extraction protocol RNA extraction was performed using a commercially available kit (RNeasy, Qiagen, Frederick,MD) according to the manufactures’ recommendations. RNA quality was confirmed based on a RNA integrity number >8 by use of an electrophoresis bioanalyzer (2100 Agilent Bioanalyser).
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep RNA Amplification Kit for Illumina arrays
 
Hybridization protocol Whole Genome Gene Expression Direct Hybridization
Scan protocol Illumina HiScan
Description 9373549084_B
Data processing Signal calculated by GenomeStudio Data Analysis Software’s Gene Expression Module (GSGX) Version 1.5.4 (Illumina, Inc.)
The data were normalised using quantile method
 
Submission date Oct 17, 2014
Last update date Mar 18, 2015
Contact name Francesco Bertoni
E-mail(s) francesco.bertoni@ior.usi.ch
Phone +41 91 820 0367
Organization name IOR
Department Lymphoma & Genomics Research Program
Street address Via V. Vela 6
City Bellinzona
State/province Ticino
ZIP/Postal code 6500
Country Switzerland
 
Platform ID GPL10558
Series (1)
GSE62460 Preclinical antitumor activity of ST7612AA1: a novel second generation oral histone deacetylase (HDAC) inhibitor

Data table header descriptions
ID_REF
VALUE Log2 Normalized Data

Data table
ID_REF VALUE
ILMN_1762337 6.552419982
ILMN_2055271 6.790143946
ILMN_1736007 6.695997132
ILMN_2383229 6.520082822
ILMN_1806310 6.612354889
ILMN_1779670 6.612260445
ILMN_1653355 6.560453664
ILMN_1717783 6.535120839
ILMN_1705025 6.519702501
ILMN_1814316 6.560052381
ILMN_2359168 6.521316251
ILMN_1731507 6.557877825
ILMN_1787689 6.5805263
ILMN_3241953 9.212666819
ILMN_1745607 6.60589447
ILMN_2136495 6.557370882
ILMN_1668111 6.573980354
ILMN_2295559 6.54347954
ILMN_1735045 6.839642459
ILMN_1680754 6.719151411

Total number of rows: 47231

Table truncated, full table size 1147 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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