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Sample GSM154005 Query DataSets for GSM154005
Status Public on Jun 24, 2007
Title BG03 CM p35
Sample type RNA
 
Source name Human embryonic stem cell line BG03, 35 passages in MEF-CM
Organism Homo sapiens
Characteristics BG03 cell line, karyotypically normal, female
Biomaterial provider Thomas Schulz, Novocell Inc.
Treatment protocol No Treatment
Growth protocol BG03 cells were maintained in standard MEF-CM conditions for 35 passages. See Xu et all Nat Biotechnol 19, 971-974 (2001).
Extracted molecule total RNA
Extraction protocol Trizol reagent (Invitrogen, Inc.)
Label Biotin-Labeled cRNA
Label protocol Illlumina RNA amplification kit, according to the manufacturer’s protocol
 
Hybridization protocol Refer to the Illumina Gene Expression System Manual
Scan protocol Refer to the Illumina Gene Expression System Manual
Description Comparison of gene expression in human embyronic stem cells grown in MEF-CM or defined media conditions
Data processing Raw data for each sample was output using the Illumina BeadStudio software
 
Submission date Jan 04, 2007
Last update date Jan 08, 2007
Contact name Tom Schulz
E-mail(s) tschulz@novocell.com
Organization name Novocell
Street address 111 Riverbend Rd
City Athens
State/province GA
ZIP/Postal code 30602
Country USA
 
Platform ID GPL2507
Series (1)
GSE6645 Comparison of gene expression in human embyronic stem cells grown in MEF-CM or defined media conditions

Data table header descriptions
ID_REF
VALUE Average Signal output using Illumina Inc. BeadStudio software, Normalization = Background

Data table
ID_REF VALUE
GI_10047089-S -2.3
GI_10047091-S 74.2
GI_10047093-S 456.7
GI_10047099-S 183.2
GI_10047103-S 3156.4
GI_10047105-S -13.6
GI_10047121-S 4.1
GI_10047123-S 129.4
GI_10047133-A -4.8
GI_10047133-I 7.1
GI_10092578-S -10.2
GI_10092585-S 43.1
GI_10092596-S 85
GI_10092600-S 437.9
GI_10092602-S 11.9
GI_10092603-S -0.2
GI_10092611-A 44.3
GI_10092616-S 48.7
GI_10092618-S 446.6
GI_10092638-S 65.7

Total number of rows: 47289

Table truncated, full table size 812 Kbytes.




Supplementary file Size Download File type/resource
GSM154005.txt.gz 1.2 Mb (ftp)(http) TXT

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