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GEO accession:
Sample GSM154139
Query DataSets for GSM154139
Status
Public on Jan 13, 2007
Title
Alzheimer_Affected_APOE44
Sample type
SAGE
Anchor
NlaIII
Tag Count
67984
Tag Length
10
Source name
Hippocampus; APOE4/4
Organism
Homo sapiens
Characteristics
Gender: Male
Age: 83.2
B&B Stage: IV
PMD: 2:57
Biomaterial provider
Duke ADRC
Extracted molecule
total RNA
Extraction protocol
As per Trizol Manufacturer Protocol
Description
N/A
Submission date
Jan 05, 2007
Last update date
Nov 19, 2008
Contact name
Puting Xu
E-mail(s)
pxu@chg.duhs.duke.edu
Phone
919-684-0686
Fax
919-684-0939
Organization name
Duke
Department
Medicine
Lab
Center for Human Genetics
Street address
595 LaSalle St
City
Durham
State/province
NC
ZIP/Postal code
27710
Country
USA
Platform ID
GPL4
Series (1)
GSE6677
A SAGE approach to discovery of apolipoprotein E4 allele-specific genes involved in increased risk in Alzheimer disease
Data table header descriptions
TAG
SAGE TAG sequence
COUNT
Frequency of given tag
TPM
tags per million
Data table
TAG
COUNT
TPM
ACTGCACACT
7
102.97
GTGGTGGGCA
101
1485.64
GATTACTTGC
1
14.71
CAGTTACTTA
17
250.06
ACCCCTGAGC
1
14.71
TAATGGAAGG
10
147.09
GGTGGCACTC
15
220.64
GGTGAGACCT
33
485.41
CCCATCGTCC
888
13061.90
GTGAAACCCT
778
11443.87
ATTCACCCCC
14
205.93
GTGGCCTGGG
1
14.71
CAAGCATCCC
873
12841.26
ACTGGACTTA
1
14.71
GCACTCCAGC
75
1103.20
CCTGTAATCC
1093
16077.31
GAGAGTGGTG
1
14.71
CTCTTTGTCT
1
14.71
GGCACCTCTG
33
485.41
AGGGAATTAC
1
14.71
Total number of rows:
22167
Table truncated, full table size
413 Kbytes
.
Supplementary data files not provided
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