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GEO accession:
Sample GSM154140
Query DataSets for GSM154140
Status
Public on Jan 13, 2007
Title
Alzheimer_Control_APOE33_LongSage
Sample type
SAGE
Anchor
NlaIII
Tag Count
76030
Tag Length
17
Source name
Hippocampus; APOE3/3
Organism
Homo sapiens
Characteristics
Gender: Male
Age: 80.8
B&B Stage: I
PMD: 4:15
Extracted molecule
total RNA
Extraction protocol
As per Trizol Manufacturer Protocol
Description
N/A
Submission date
Jan 05, 2007
Last update date
Nov 19, 2008
Contact name
Puting Xu
E-mail(s)
pxu@chg.duhs.duke.edu
Phone
919-684-0686
Fax
919-684-0939
Organization name
Duke
Department
Medicine
Lab
Center for Human Genetics
Street address
595 LaSalle St
City
Durham
State/province
NC
ZIP/Postal code
27710
Country
USA
Platform ID
GPL1485
Series (1)
GSE6677
A SAGE approach to discovery of apolipoprotein E4 allele-specific genes involved in increased risk in Alzheimer disease
Data table header descriptions
TAG
Long SAGE TAG sequence
COUNT
Frequency of given tag
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAGATACTCAACATC
1
13.15
CCTCGGAAAATTGAGGA
50
657.64
CTAAGACTTCACCAGTC
2089
27476.00
GACCTCTGCCGTTCCTG
7
92.07
CACTACTCACCAGACGC
1363
17927.13
CCTGTAGTCCCAGCTGC
36
473.50
GTTTCATCTTCAGGGAG
1
13.15
TGCTGCCACCAGCAGTC
1
13.15
CCGGCAGCTTCTGCAGG
1
13.15
ACTCCCATATCCACAGC
27
355.12
AGACCCACAACAAATAG
170
2235.96
TATTTAAGTAGAAAATG
1
13.15
TTAGCCAGGATGGTCTC
8
105.22
CCCAACGCGCTGTCCGC
113
1486.26
AAAATACAAAGGATCAG
1
13.15
CCTGTAATACCAGCTAC
5
65.76
TCGAAGCCCCCATCGCT
143
1880.84
CAAGCATCCCCGTTCCA
1046
13757.73
CATTTGGTATTTTCGTC
11
144.68
GGAGATGAGGAAGACAG
5
65.76
Total number of rows:
31516
Table truncated, full table size
801 Kbytes
.
Supplementary data files not provided
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