NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM154141 Query DataSets for GSM154141
Status Public on Jan 13, 2007
Title Alzheimer_Affected_APOE33_LongSage
Sample type SAGE
Anchor NlaIII
Tag Count 81208
Tag Length 17
 
Source name Hippocampus; APOE3/3
Organism Homo sapiens
Characteristics Gender: Female
Age: 90
B&B Stage: IV
PMD: 2:20
Extracted molecule total RNA
Extraction protocol As per Trizol Manufacturer Protocol
 
Description N/A
 
Submission date Jan 05, 2007
Last update date Nov 19, 2008
Contact name Puting Xu
E-mail(s) pxu@chg.duhs.duke.edu
Phone 919-684-0686
Fax 919-684-0939
Organization name Duke
Department Medicine
Lab Center for Human Genetics
Street address 595 LaSalle St
City Durham
State/province NC
ZIP/Postal code 27710
Country USA
 
Platform ID GPL1485
Series (1)
GSE6677 A SAGE approach to discovery of apolipoprotein E4 allele-specific genes involved in increased risk in Alzheimer disease

Data table header descriptions
TAG Long SAGE TAG sequence
COUNT Frequency of given tag
TPM tags per million

Data table
TAG COUNT TPM
TAGAGTATATGAGGAGG 18 221.65
CACCTAATTGGAAGCGC 1196 14727.61
TTGGCCAGAATAGAACC 7 86.20
CTTTTAGGCCTTTGGGG 103 1268.35
TGTAGCTGCAAACACTG 4 49.26
CAAGCATCCCCGTTCCA 563 6932.81
TTTGCCAAGGGATGGGC 1 12.31
GTGAGGCCCCATCTCTG 2 24.63
TTACTAAATTACGTATG 3 36.94
TAAAACCGTTTGGCGGC 15 184.71
ACTAACACCCTTAATTC 951 11710.67
CCATTGCGCTGCCCCGG 9 110.83
ATCTAGCAGACAAGTTG 1 12.31
TGATTTCACTTCCACTC 1549 19074.48
CAGCTGGGGCGCGGCGG 8 98.51
ATAAATCATATGTTAGG 2 24.63
GCCGCTACTTCAGGAGC 12 147.77
GTTTCATCTCCAGGGAG 95 1169.84
GCTAACAGGGTGAAACC 2 24.63
TAATCCCAGCACTTTGG 20 246.28

Total number of rows: 35334

Table truncated, full table size 898 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap