NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM154253 Query DataSets for GSM154253
Status Public on Dec 01, 2007
Title AM14 B cells, PL2-3, rep1
Sample type RNA
 
Source name Murine AM-14 B cells
Organism Mus musculus
Characteristics Splenic B cells from MRL/+ AM14 mice
Treatment protocol PL2-3 (Chromatin IC)
Extracted molecule total RNA
Extraction protocol Standard Qiagen RNeasy mini kit protocol (www.qiagen.com)
Label Biotin
Label protocol Standard EnzoBio protocols (www.enzo.com)
 
Hybridization protocol Standard Affymetrix protocol (www.affymetrix.com)
Scan protocol Standard Affymetrix protocol (www.affymetrix.com)
Description AM14 B cells, PL2-3 treated
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings in Genedata Expressionist and global scaling with mask correction as normalization method. The mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Jan 08, 2007
Last update date Aug 28, 2018
Contact name Jason W Bauer
E-mail(s) baue0271@umn.edu
Phone 612-625-5168
Organization name University of Minnesota
Street address 420 Deleware St SE MMC108
City Minneapolis
State/province MN
ZIP/Postal code 55455
Country USA
 
Platform ID GPL1261
Series (1)
GSE6674 Gene expression program of AM-14 B cells stimulated through the B cell receptor (BCR) and/or Toll-like receptors (TLR)
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF Affymetrix Probe Set ID
VALUE scaled Affymetrix intensity units

Data table
ID_REF VALUE
1415670_at 5807.93
1415671_at 8598.4
1415672_at 14618.39
1415673_at 4390.8
1415674_a_at 9532.17
1415675_at 5537.31
1415676_a_at 29056.95
1415677_at 774.92
1415678_at 4890.06
1415679_at 19238.52
1415680_at 6398.74
1415681_at 7891.1
1415682_at 3430.29
1415683_at 19536.77
1415684_at 2207.7
1415685_at 1097.6
1415686_at 4248.76
1415687_a_at 31242.18
1415688_at 12630.4
1415689_s_at 1710.97

Total number of rows: 45101

Table truncated, full table size 811 Kbytes.




Supplementary file Size Download File type/resource
GSM154253.CEL.gz 6.0 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap