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Sample GSM1544136 Query DataSets for GSM1544136
Status Public on Dec 10, 2014
Title Pri clone 3
Sample type RNA
 
Source name D16 primary reprogramming
Organism Mus musculus
Characteristics strain: rtTA Mouse
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description C-class cells
Data processing The data were normalised using quantile normalisation with Lumi in R, no background correction.
 
Submission date Nov 13, 2014
Last update date Dec 10, 2014
Contact name Andras Nagy
E-mail(s) nagy@lunenfeld.ca
Organization name Lunenfeld Tanenbaum Research Institute
Department Mount Sinai Hospital
Street address 25 Orde street
City Toronto
ZIP/Postal code M5T3H7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE49940 Genome-wide analysis of gene expression during somatic cell reprogramming

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 126.1930911 0.19048
ILMN_1212612 98.83246921 0.89724
ILMN_1212619 206.5300219 0.00376
ILMN_1212628 116.1926439 0.37594
ILMN_1212632 271.9014891 0
ILMN_1212636 8884.8977 0
ILMN_1212637 887.2524126 0
ILMN_1212645 113.0539167 0.46992
ILMN_1212648 881.6898627 0
ILMN_1212653 175.5080813 0.01504
ILMN_1212672 1385.672562 0
ILMN_1212682 111.2872839 0.53258
ILMN_1212683 94.42691748 0.97118
ILMN_1212685 114.831691 0.40852
ILMN_1212692 471.9891064 0
ILMN_1212693 185.3520781 0.01003
ILMN_1212695 108.0279188 0.63784
ILMN_1212698 101.8660048 0.83459
ILMN_1212702 312.7859312 0
ILMN_1212703 233.8315796 0

Total number of rows: 25697

Table truncated, full table size 768 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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