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Sample GSM1544138 Query DataSets for GSM1544138
Status Public on Dec 10, 2014
Title Pri clone 5
Sample type RNA
 
Source name D16 primary reprogramming
Organism Mus musculus
Characteristics strain: rtTA Mouse
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description C-class cells
Data processing The data were normalised using quantile normalisation with Lumi in R, no background correction.
 
Submission date Nov 13, 2014
Last update date Dec 10, 2014
Contact name Andras Nagy
E-mail(s) nagy@lunenfeld.ca
Organization name Lunenfeld Tanenbaum Research Institute
Department Mount Sinai Hospital
Street address 25 Orde street
City Toronto
ZIP/Postal code M5T3H7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE49940 Genome-wide analysis of gene expression during somatic cell reprogramming

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 110.6397628 0.51378
ILMN_1212612 118.3993117 0.30827
ILMN_1212619 206.2141719 0.00376
ILMN_1212628 117.5635517 0.32707
ILMN_1212632 235.1823093 0
ILMN_1212636 9483.618217 0
ILMN_1212637 974.3735874 0
ILMN_1212645 110.8217916 0.50877
ILMN_1212648 928.5442767 0
ILMN_1212653 158.5681562 0.02882
ILMN_1212672 1157.033973 0
ILMN_1212682 106.783649 0.65664
ILMN_1212683 91.60412625 0.98371
ILMN_1212685 120.9923719 0.25815
ILMN_1212692 695.0493376 0
ILMN_1212693 151.919614 0.03509
ILMN_1212695 113.9877282 0.42607
ILMN_1212698 96.09266877 0.9411
ILMN_1212702 367.1265891 0
ILMN_1212703 247.7387141 0

Total number of rows: 25697

Table truncated, full table size 769 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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