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Sample GSM1544141 Query DataSets for GSM1544141
Status Public on Dec 10, 2014
Title Pri clone 8
Sample type RNA
 
Source name D16 primary reprogramming
Organism Mus musculus
Characteristics strain: rtTA Mouse
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description C-class cells
Data processing The data were normalised using quantile normalisation with Lumi in R, no background correction.
 
Submission date Nov 13, 2014
Last update date Dec 10, 2014
Contact name Andras Nagy
E-mail(s) nagy@lunenfeld.ca
Organization name Lunenfeld Tanenbaum Research Institute
Department Mount Sinai Hospital
Street address 25 Orde street
City Toronto
ZIP/Postal code M5T3H7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE49940 Genome-wide analysis of gene expression during somatic cell reprogramming

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 116.9371347 0.3208
ILMN_1212612 114.96356 0.37719
ILMN_1212619 201.2257376 0.00125
ILMN_1212628 116.1968859 0.3396
ILMN_1212632 247.0446921 0
ILMN_1212636 8966.907438 0
ILMN_1212637 982.7904483 0
ILMN_1212645 118.0252815 0.30075
ILMN_1212648 832.3507982 0
ILMN_1212653 173.3876828 0.01504
ILMN_1212672 1308.192524 0
ILMN_1212682 109.6056009 0.5401
ILMN_1212683 104.8405133 0.70802
ILMN_1212685 117.9395933 0.30451
ILMN_1212692 437.4776031 0
ILMN_1212693 142.0055953 0.0589
ILMN_1212695 115.5355217 0.35714
ILMN_1212698 106.1211334 0.66416
ILMN_1212702 764.8088392 0
ILMN_1212703 238.6543954 0

Total number of rows: 25697

Table truncated, full table size 765 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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