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Sample GSM1544142 Query DataSets for GSM1544142
Status Public on Dec 10, 2014
Title Pri clone 9
Sample type RNA
 
Source name D16 primary reprogramming
Organism Mus musculus
Characteristics strain: rtTA Mouse
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description C-class cells
Data processing The data were normalised using quantile normalisation with Lumi in R, no background correction.
 
Submission date Nov 13, 2014
Last update date Dec 10, 2014
Contact name Andras Nagy
E-mail(s) nagy@lunenfeld.ca
Organization name Lunenfeld Tanenbaum Research Institute
Department Mount Sinai Hospital
Street address 25 Orde street
City Toronto
ZIP/Postal code M5T3H7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE49940 Genome-wide analysis of gene expression during somatic cell reprogramming

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 117.1415028 0.30576
ILMN_1212612 112.1486142 0.49624
ILMN_1212619 190.8070031 0
ILMN_1212628 114.9682174 0.39098
ILMN_1212632 260.6977375 0
ILMN_1212636 7554.953131 0
ILMN_1212637 1057.939865 0
ILMN_1212645 141.5138047 0.04511
ILMN_1212648 896.299942 0
ILMN_1212653 169.8226375 0.01003
ILMN_1212672 1268.364088 0
ILMN_1212682 116.0411442 0.35088
ILMN_1212683 88.99366546 0.99749
ILMN_1212685 113.4771022 0.44737
ILMN_1212692 802.0261143 0
ILMN_1212693 187.3964265 0.00125
ILMN_1212695 123.7244667 0.18296
ILMN_1212698 96.91248672 0.94361
ILMN_1212702 634.1686765 0
ILMN_1212703 232.8384562 0

Total number of rows: 25697

Table truncated, full table size 762 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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