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Sample GSM1544143 Query DataSets for GSM1544143
Status Public on Dec 10, 2014
Title Pri clone 10
Sample type RNA
 
Source name D16 primary reprogramming
Organism Mus musculus
Characteristics strain: rtTA Mouse
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description C-class cells
Data processing The data were normalised using quantile normalisation with Lumi in R, no background correction.
 
Submission date Nov 13, 2014
Last update date Dec 10, 2014
Contact name Andras Nagy
E-mail(s) nagy@lunenfeld.ca
Organization name Lunenfeld Tanenbaum Research Institute
Department Mount Sinai Hospital
Street address 25 Orde street
City Toronto
ZIP/Postal code M5T3H7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE49940 Genome-wide analysis of gene expression during somatic cell reprogramming

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 111.4842373 0.52381
ILMN_1212612 132.9832515 0.11779
ILMN_1212619 162.6224203 0.02256
ILMN_1212628 120.6052139 0.2619
ILMN_1212632 245.2569 0
ILMN_1212636 8465.853747 0
ILMN_1212637 1107.642638 0
ILMN_1212645 121.0470886 0.24937
ILMN_1212648 801.156403 0
ILMN_1212653 157.1442219 0.03008
ILMN_1212672 1347.069135 0
ILMN_1212682 109.2479566 0.60526
ILMN_1212683 100.2937813 0.86842
ILMN_1212685 118.3209633 0.30827
ILMN_1212692 420.7151782 0
ILMN_1212693 149.9825093 0.04261
ILMN_1212695 109.8433508 0.57769
ILMN_1212698 109.6171711 0.58772
ILMN_1212702 366.6413422 0
ILMN_1212703 260.9712031 0

Total number of rows: 25697

Table truncated, full table size 766 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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