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Sample GSM1544145 Query DataSets for GSM1544145
Status Public on Dec 10, 2014
Title Pri clone 12
Sample type RNA
 
Source name D16 primary reprogramming
Organism Mus musculus
Characteristics strain: rtTA Mouse
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description C-class cells
Data processing The data were normalised using quantile normalisation with Lumi in R, no background correction.
 
Submission date Nov 13, 2014
Last update date Dec 10, 2014
Contact name Andras Nagy
E-mail(s) nagy@lunenfeld.ca
Organization name Lunenfeld Tanenbaum Research Institute
Department Mount Sinai Hospital
Street address 25 Orde street
City Toronto
ZIP/Postal code M5T3H7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE49940 Genome-wide analysis of gene expression during somatic cell reprogramming

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 112.434625 0.47744
ILMN_1212612 111.4970966 0.50752
ILMN_1212619 176.7510735 0.01128
ILMN_1212628 117.4298355 0.32206
ILMN_1212632 293.8190954 0
ILMN_1212636 8489.09103 0
ILMN_1212637 1053.952439 0
ILMN_1212645 104.6235627 0.76316
ILMN_1212648 806.6322656 0
ILMN_1212653 173.2961562 0.01253
ILMN_1212672 1211.830394 0
ILMN_1212682 118.8024336 0.29323
ILMN_1212683 101.7318017 0.84586
ILMN_1212685 120.3432073 0.2594
ILMN_1212692 431.5761827 0
ILMN_1212693 157.3986672 0.02882
ILMN_1212695 113.5541779 0.44486
ILMN_1212698 95.19360203 0.95489
ILMN_1212702 402.332978 0
ILMN_1212703 268.8709859 0

Total number of rows: 25697

Table truncated, full table size 768 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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