NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1544148 Query DataSets for GSM1544148
Status Public on Dec 10, 2014
Title Pri clone 15
Sample type RNA
 
Source name D16 primary reprogramming
Organism Mus musculus
Characteristics strain: rtTA Mouse
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description C-class cells
Data processing The data were normalised using quantile normalisation with Lumi in R, no background correction.
 
Submission date Nov 13, 2014
Last update date Dec 10, 2014
Contact name Andras Nagy
E-mail(s) nagy@lunenfeld.ca
Organization name Lunenfeld Tanenbaum Research Institute
Department Mount Sinai Hospital
Street address 25 Orde street
City Toronto
ZIP/Postal code M5T3H7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE49940 Genome-wide analysis of gene expression during somatic cell reprogramming

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 104.9101373 0.71429
ILMN_1212612 132.3234812 0.07895
ILMN_1212619 221.8734485 0
ILMN_1212628 113.4471862 0.4198
ILMN_1212632 234.2524593 0
ILMN_1212636 7887.554318 0
ILMN_1212637 1019.69683 0
ILMN_1212645 108.1818733 0.59273
ILMN_1212648 961.8390203 0
ILMN_1212653 186.6621766 0
ILMN_1212672 1136.675331 0
ILMN_1212682 104.3361488 0.72556
ILMN_1212683 102.9559147 0.7807
ILMN_1212685 127.2073936 0.11905
ILMN_1212692 667.7613373 0
ILMN_1212693 200.5545593 0
ILMN_1212695 116.8099405 0.31579
ILMN_1212698 105.5027216 0.69173
ILMN_1212702 701.0743937 0
ILMN_1212703 246.6070328 0

Total number of rows: 25697

Table truncated, full table size 760 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap