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Sample GSM1544150 Query DataSets for GSM1544150
Status Public on Dec 10, 2014
Title Pri clone 17
Sample type RNA
 
Source name D16 primary reprogramming
Organism Mus musculus
Characteristics strain: rtTA Mouse
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description C-class cells
Data processing The data were normalised using quantile normalisation with Lumi in R, no background correction.
 
Submission date Nov 13, 2014
Last update date Dec 10, 2014
Contact name Andras Nagy
E-mail(s) nagy@lunenfeld.ca
Organization name Lunenfeld Tanenbaum Research Institute
Department Mount Sinai Hospital
Street address 25 Orde street
City Toronto
ZIP/Postal code M5T3H7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE49940 Genome-wide analysis of gene expression during somatic cell reprogramming

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 130.3440141 0.12281
ILMN_1212612 131.8572656 0.11654
ILMN_1212619 151.3048516 0.03634
ILMN_1212628 108.0981919 0.61529
ILMN_1212632 235.5129766 0
ILMN_1212636 8420.471423 0
ILMN_1212637 1211.368637 0
ILMN_1212645 111.7229216 0.47744
ILMN_1212648 830.7042251 0
ILMN_1212653 214.2730281 0
ILMN_1212672 1178.120245 0
ILMN_1212682 123.8373006 0.18797
ILMN_1212683 105.0458124 0.72807
ILMN_1212685 114.0038524 0.40476
ILMN_1212692 420.3046187 0
ILMN_1212693 153.5440547 0.03133
ILMN_1212695 114.1861231 0.39348
ILMN_1212698 101.0583731 0.83709
ILMN_1212702 475.8262311 0
ILMN_1212703 306.3249797 0

Total number of rows: 25697

Table truncated, full table size 765 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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