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Sample GSM1544152 Query DataSets for GSM1544152
Status Public on Dec 10, 2014
Title Pri clone 19
Sample type RNA
 
Source name D16 primary reprogramming
Organism Mus musculus
Characteristics strain: rtTA Mouse
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description C-class cells
Data processing The data were normalised using quantile normalisation with Lumi in R, no background correction.
 
Submission date Nov 13, 2014
Last update date Dec 10, 2014
Contact name Andras Nagy
E-mail(s) nagy@lunenfeld.ca
Organization name Lunenfeld Tanenbaum Research Institute
Department Mount Sinai Hospital
Street address 25 Orde street
City Toronto
ZIP/Postal code M5T3H7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE49940 Genome-wide analysis of gene expression during somatic cell reprogramming

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 124.436532 0.19799
ILMN_1212612 111.4580747 0.49624
ILMN_1212619 192.7001968 0.00251
ILMN_1212628 100.5918853 0.86967
ILMN_1212632 209.841864 0
ILMN_1212636 8180.928008 0
ILMN_1212637 1056.047455 0
ILMN_1212645 116.83027 0.34336
ILMN_1212648 843.6373628 0
ILMN_1212653 159.892689 0.02256
ILMN_1212672 1111.441338 0
ILMN_1212682 113.5098958 0.41855
ILMN_1212683 91.94078341 0.97995
ILMN_1212685 114.7553894 0.38972
ILMN_1212692 594.9248143 0
ILMN_1212693 184.1356047 0.00501
ILMN_1212695 131.2718156 0.13033
ILMN_1212698 92.31275231 0.9787
ILMN_1212702 617.6897721 0
ILMN_1212703 268.6070891 0

Total number of rows: 25697

Table truncated, full table size 764 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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