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Sample GSM1544158 Query DataSets for GSM1544158
Status Public on Dec 10, 2014
Title Pri clone 25
Sample type RNA
 
Source name D16 primary reprogramming
Organism Mus musculus
Characteristics strain: rtTA Mouse
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description C-class cells
Data processing The data were normalised using quantile normalisation with Lumi in R, no background correction.
 
Submission date Nov 13, 2014
Last update date Dec 10, 2014
Contact name Andras Nagy
E-mail(s) nagy@lunenfeld.ca
Organization name Lunenfeld Tanenbaum Research Institute
Department Mount Sinai Hospital
Street address 25 Orde street
City Toronto
ZIP/Postal code M5T3H7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE49940 Genome-wide analysis of gene expression during somatic cell reprogramming

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 116.6789414 0.33083
ILMN_1212612 124.5138751 0.17669
ILMN_1212619 146.5182391 0.05013
ILMN_1212628 117.0293648 0.31454
ILMN_1212632 362.0991344 0
ILMN_1212636 9248.363836 0
ILMN_1212637 1524.872951 0
ILMN_1212645 131.8186422 0.10526
ILMN_1212648 907.6956549 0
ILMN_1212653 146.3204078 0.05013
ILMN_1212672 1225.21934 0
ILMN_1212682 107.3014242 0.61028
ILMN_1212683 102.1907893 0.79323
ILMN_1212685 109.8295914 0.52757
ILMN_1212692 978.773658 0
ILMN_1212693 131.2222625 0.11028
ILMN_1212695 114.7141411 0.3797
ILMN_1212698 105.9015564 0.6604
ILMN_1212702 618.7892391 0
ILMN_1212703 272.484911 0

Total number of rows: 25697

Table truncated, full table size 768 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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