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Sample GSM1544160 Query DataSets for GSM1544160
Status Public on Dec 10, 2014
Title Pri clone 27
Sample type RNA
 
Source name D16 primary reprogramming
Organism Mus musculus
Characteristics strain: rtTA Mouse
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description F-class cells
Data processing The data were normalised using quantile normalisation with Lumi in R, no background correction.
 
Submission date Nov 13, 2014
Last update date Dec 10, 2014
Contact name Andras Nagy
E-mail(s) nagy@lunenfeld.ca
Organization name Lunenfeld Tanenbaum Research Institute
Department Mount Sinai Hospital
Street address 25 Orde street
City Toronto
ZIP/Postal code M5T3H7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE49940 Genome-wide analysis of gene expression during somatic cell reprogramming

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 115.6749989 0.39474
ILMN_1212612 121.9609076 0.22932
ILMN_1212619 154.4131907 0.02757
ILMN_1212628 117.521962 0.32832
ILMN_1212632 275.1636485 0
ILMN_1212636 8477.392444 0
ILMN_1212637 1155.085076 0
ILMN_1212645 132.3526813 0.1015
ILMN_1212648 723.5884999 0
ILMN_1212653 181.3745204 0.00376
ILMN_1212672 1377.636264 0
ILMN_1212682 105.5899211 0.69799
ILMN_1212683 99.03889081 0.89975
ILMN_1212685 121.2707718 0.24185
ILMN_1212692 194.4909907 0.00125
ILMN_1212693 137.2974438 0.0802
ILMN_1212695 111.0938353 0.53258
ILMN_1212698 98.12540919 0.91855
ILMN_1212702 204.989564 0
ILMN_1212703 292.3032922 0

Total number of rows: 25697

Table truncated, full table size 765 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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