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Sample GSM1544167 Query DataSets for GSM1544167
Status Public on Dec 10, 2014
Title 1B 2° D11
Sample type RNA
 
Source name D11 secondary reprogramming
Organism Mus musculus
Characteristics strain: rtTA Mouse
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Reprogramming cells
Data processing The data were normalised using quantile normalisation with Lumi in R, no background correction.
 
Submission date Nov 13, 2014
Last update date Dec 10, 2014
Contact name Andras Nagy
E-mail(s) nagy@lunenfeld.ca
Organization name Lunenfeld Tanenbaum Research Institute
Department Mount Sinai Hospital
Street address 25 Orde street
City Toronto
ZIP/Postal code M5T3H7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE49940 Genome-wide analysis of gene expression during somatic cell reprogramming

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 126.0756954 0.141604
ILMN_1212612 108.0419065 0.6403509
ILMN_1212619 176.3046063 0.001253133
ILMN_1212628 126.4324656 0.1378446
ILMN_1212632 199.88295 0.001253133
ILMN_1212636 11708.96106 0
ILMN_1212637 1051.962893 0
ILMN_1212645 89.51700703 0.9874687
ILMN_1212648 385.9247077 0
ILMN_1212653 132.5471984 0.07769424
ILMN_1212672 698.5718921 0
ILMN_1212682 115.1647354 0.3834586
ILMN_1212683 110.7061044 0.5363408
ILMN_1212685 104.3192488 0.7706767
ILMN_1212692 1032.643341 0
ILMN_1212693 179.7954391 0.001253133
ILMN_1212695 128.046182 0.1215539
ILMN_1212698 99.82592659 0.8872181
ILMN_1212702 441.8287407 0
ILMN_1212703 187.8570906 0.001253133

Total number of rows: 25697

Table truncated, full table size 803 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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