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Sample GSM1544169 Query DataSets for GSM1544169
Status Public on Dec 10, 2014
Title 1B 2° D18
Sample type RNA
 
Source name D18 secondary reprogramming
Organism Mus musculus
Characteristics strain: rtTA Mouse
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description F-class cells
Data processing The data were normalised using quantile normalisation with Lumi in R, no background correction.
 
Submission date Nov 13, 2014
Last update date Dec 10, 2014
Contact name Andras Nagy
E-mail(s) nagy@lunenfeld.ca
Organization name Lunenfeld Tanenbaum Research Institute
Department Mount Sinai Hospital
Street address 25 Orde street
City Toronto
ZIP/Postal code M5T3H7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE49940 Genome-wide analysis of gene expression during somatic cell reprogramming

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 124.7627719 0.1829574
ILMN_1212612 112.2238695 0.5363408
ILMN_1212619 157.0377547 0.01503759
ILMN_1212628 119.1310815 0.2932331
ILMN_1212632 224.4426297 0
ILMN_1212636 12240.42389 0
ILMN_1212637 1370.007048 0
ILMN_1212645 100.1730488 0.89599
ILMN_1212648 332.0700845 0
ILMN_1212653 137.2551203 0.07769424
ILMN_1212672 987.0836704 0
ILMN_1212682 115.0080939 0.443609
ILMN_1212683 109.6731014 0.6102757
ILMN_1212685 103.8092503 0.8095238
ILMN_1212692 206.5620031 0
ILMN_1212693 161.1165703 0.01002506
ILMN_1212695 119.4937521 0.2857143
ILMN_1212698 99.5438061 0.9047619
ILMN_1212702 188.48595 0
ILMN_1212703 191.6032968 0

Total number of rows: 25697

Table truncated, full table size 795 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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