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Sample GSM1544173 Query DataSets for GSM1544173
Status Public on Dec 10, 2014
Title ESC2
Sample type RNA
 
Source name ESCs replicate 2
Organism Mus musculus
Characteristics strain: rtTA Mouse
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description ESC control
Data processing The data were normalised using quantile normalisation with Lumi in R, no background correction.
 
Submission date Nov 13, 2014
Last update date Dec 10, 2014
Contact name Andras Nagy
E-mail(s) nagy@lunenfeld.ca
Organization name Lunenfeld Tanenbaum Research Institute
Department Mount Sinai Hospital
Street address 25 Orde street
City Toronto
ZIP/Postal code M5T3H7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE49940 Genome-wide analysis of gene expression during somatic cell reprogramming

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 108.8576703 0.6203008
ILMN_1212612 109.7072752 0.5864662
ILMN_1212619 205.0235156 0
ILMN_1212628 139.2523078 0.03759398
ILMN_1212632 172.9410219 0.003759399
ILMN_1212636 10031.26229 0
ILMN_1212637 1120.215174 0
ILMN_1212645 105.0458124 0.7581454
ILMN_1212648 648.7468593 0
ILMN_1212653 117.2093499 0.3195489
ILMN_1212672 741.9504455 0
ILMN_1212682 129.004792 0.1165414
ILMN_1212683 97.2516156 0.9423559
ILMN_1212685 103.8154503 0.7932331
ILMN_1212692 561.5821314 0
ILMN_1212693 163.7161547 0.006265664
ILMN_1212695 111.0121997 0.5438597
ILMN_1212698 97.60234748 0.9398496
ILMN_1212702 113.4997028 0.4448622
ILMN_1212703 151.2554875 0.01503759

Total number of rows: 25697

Table truncated, full table size 799 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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