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Sample GSM1544174 Query DataSets for GSM1544174
Status Public on Dec 10, 2014
Title Myc1_0h
Sample type RNA
 
Source name Tet-Myc line1
Organism Mus musculus
Characteristics strain: rtTA Mouse
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Tet-Myc line1 plus dox
Data processing The data were normalised using quantile normalisation with Lumi in R, no background correction.
 
Submission date Nov 13, 2014
Last update date Dec 10, 2014
Contact name Andras Nagy
E-mail(s) nagy@lunenfeld.ca
Organization name Lunenfeld Tanenbaum Research Institute
Department Mount Sinai Hospital
Street address 25 Orde street
City Toronto
ZIP/Postal code M5T3H7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE49940 Genome-wide analysis of gene expression during somatic cell reprogramming

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 113.7319106 0.4937343
ILMN_1212612 108.4932924 0.6716792
ILMN_1212619 157.7458891 0.03007519
ILMN_1212628 111.0141539 0.5814536
ILMN_1212632 212.3520984 0
ILMN_1212636 7626.738134 0
ILMN_1212637 1194.046255 0
ILMN_1212645 126.0721075 0.2130326
ILMN_1212648 825.9285986 0
ILMN_1212653 202.9695109 0.002506266
ILMN_1212672 775.00557 0
ILMN_1212682 125.5096553 0.2180451
ILMN_1212683 103.3731433 0.8270677
ILMN_1212685 113.7475516 0.4924812
ILMN_1212692 585.3781204 0
ILMN_1212693 176.0888532 0.00877193
ILMN_1212695 129.9546781 0.1729323
ILMN_1212698 98.75619435 0.9310777
ILMN_1212702 768.4813032 0
ILMN_1212703 269.9192719 0

Total number of rows: 25697

Table truncated, full table size 801 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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