NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1544175 Query DataSets for GSM1544175
Status Public on Dec 10, 2014
Title Myc1_48h
Sample type RNA
 
Source name Tet-Myc line1
Organism Mus musculus
Characteristics strain: rtTA Mouse
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Tet-Myc line1 48h no dox
Data processing The data were normalised using quantile normalisation with Lumi in R, no background correction.
 
Submission date Nov 13, 2014
Last update date Dec 10, 2014
Contact name Andras Nagy
E-mail(s) nagy@lunenfeld.ca
Organization name Lunenfeld Tanenbaum Research Institute
Department Mount Sinai Hospital
Street address 25 Orde street
City Toronto
ZIP/Postal code M5T3H7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE49940 Genome-wide analysis of gene expression during somatic cell reprogramming

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 113.3575126 0.4411027
ILMN_1212612 153.8706859 0.02005013
ILMN_1212619 256.4355235 0
ILMN_1212628 141.2249719 0.04887218
ILMN_1212632 258.9492407 0
ILMN_1212636 6430.299414 0
ILMN_1212637 969.3985531 0
ILMN_1212645 161.0104297 0.00877193
ILMN_1212648 1407.720751 0
ILMN_1212653 196.8148 0
ILMN_1212672 596.81335 0
ILMN_1212682 108.5446928 0.6052632
ILMN_1212683 95.11752204 0.9461153
ILMN_1212685 111.5397122 0.5075188
ILMN_1212692 890.2162829 0
ILMN_1212693 237.9270344 0
ILMN_1212695 117.6324083 0.3258145
ILMN_1212698 101.0664023 0.8345864
ILMN_1212702 408.2258001 0
ILMN_1212703 248.6790156 0

Total number of rows: 25697

Table truncated, full table size 799 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap