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Sample GSM1544176 Query DataSets for GSM1544176
Status Public on Dec 10, 2014
Title Myc2_0h
Sample type RNA
 
Source name Tet-Myc line2
Organism Mus musculus
Characteristics strain: rtTA Mouse
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Tet-Myc line2 plus dox
Data processing The data were normalised using quantile normalisation with Lumi in R, no background correction.
 
Submission date Nov 13, 2014
Last update date Dec 10, 2014
Contact name Andras Nagy
E-mail(s) nagy@lunenfeld.ca
Organization name Lunenfeld Tanenbaum Research Institute
Department Mount Sinai Hospital
Street address 25 Orde street
City Toronto
ZIP/Postal code M5T3H7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE49940 Genome-wide analysis of gene expression during somatic cell reprogramming

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 110.2339206 0.5927318
ILMN_1212612 103.6492803 0.8220552
ILMN_1212619 355.8193639 0
ILMN_1212628 126.0902616 0.1842105
ILMN_1212632 166.2353969 0.01002506
ILMN_1212636 6531.024297 0
ILMN_1212637 1063.114469 0
ILMN_1212645 106.1616741 0.7318296
ILMN_1212648 716.7166421 0
ILMN_1212653 159.9955156 0.01378446
ILMN_1212672 585.5800235 0
ILMN_1212682 123.6702009 0.2155388
ILMN_1212683 92.65386811 0.9761904
ILMN_1212685 117.6352658 0.3621554
ILMN_1212692 1096.568872 0
ILMN_1212693 222.1277749 0
ILMN_1212695 109.0534522 0.6203008
ILMN_1212698 102.777465 0.8471178
ILMN_1212702 1114.855396 0
ILMN_1212703 227.2124907 0

Total number of rows: 25697

Table truncated, full table size 799 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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