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Sample GSM154499 Query DataSets for GSM154499
Status Public on May 18, 2007
Title GFP- CD25- CD4+ cells from Foxp3(gfp/gfp) mice
Sample type RNA
 
Source name pooled lymph node and spleen
Organism Mus musculus
Characteristics Strain: C57BL/6 backcross 8-10 from 129/Sv
Gender: Female
Age: 6-8 weeks
Treatment protocol Cells were isolated by magnetic bead sorting followed by fluorescence activated cell sorting.
Extracted molecule total RNA
Extraction protocol TelTest Stat-60 RNA extraction.
Label biotin
Label protocol RNA was converted to biotinylated cRNA (2 rounds of amplification) using commercially available reagent kits (MessageAmp II, Ambion, Austin, TX) and were hybridized to Affymetrix mouse 430 2.0 microarrays.
 
Hybridization protocol Standard hybridization to Affymetrix 430_2.0 arrays.
Scan protocol Standard scanning of Affymetrix 430_2.0 arrays.
Description Foxp3(gfp/gfp) homozygous female mice bear a GFP-Foxp3 fusion protein knockin allele, allowing for the visualization of regulatory T cells due to GFP-Foxp3 protein fluorescence.
Data processing GCMRA, Bioconductor
 
Submission date Jan 09, 2007
Last update date Aug 28, 2018
Contact name Alexander Rudensky
Organization name University of Washington
Department Immunology
Street address 1959 Pacific St
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL1261
Series (2)
GSE7280 Gene expression in peripheral cells: effects of Foxp3 and PDE3B
GSE7773 Foxp3-dependent programme of regulatory T-cell differentiation
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE peripheral TN cells

Data table
ID_REF VALUE
1415670_at 9.509784366
1415671_at 8.672283228
1415672_at 11.25185574
1415673_at 7.210161663
1415674_a_at 8.719287181
1415675_at 7.926756668
1415676_a_at 9.989184741
1415677_at 6.578809449
1415678_at 9.965871374
1415679_at 11.76518039
1415680_at 8.636552954
1415681_at 8.320529742
1415682_at 6.816400732
1415683_at 10.4193359
1415684_at 8.288072409
1415685_at 7.83472337
1415686_at 8.241546044
1415687_a_at 10.87501724
1415688_at 10.15497188
1415689_s_at 8.91762231

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM154499.CEL.gz 3.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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