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Status |
Public on Nov 11, 2015 |
Title |
MLL5-overexpressing cells, biological rep 1 |
Sample type |
RNA |
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Source name |
GBM primary culture G514NS_MLL5
|
Organism |
Homo sapiens |
Characteristics |
cell type: glioblastoma (GBM) primary culture genotype/variation: MLL5-overexpressing time point: 72 h post-transfection
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Treatment protocol |
One million cells were transfected with plasmids for the expression of either EGFP or the N-terminal isoform of MLL5. Plasmid backbone was pcDNA-DEST40. Selection for transfected cells was performed with puromycin 24 h after transfection.
|
Growth protocol |
Cells derived from an adult GBM patient and mantained in neural stem-like conditions according to a paper by Pollard et al (2009) Cell Stem Cell.
|
Extracted molecule |
total RNA |
Extraction protocol |
72 h post-transfection, total RNA was extracted with an RNA extraction kit (RNeasy Mini Kit, QIAGEN).
|
Label |
Biotin
|
Label protocol |
Fragmented ss-cDNA was lebelled with biotin allonamide triphosphate.
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|
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Hybridization protocol |
Hybridization was performed at 45°C for 16 h.
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Scan protocol |
Scanning was performed with Affymetrix GeneChip Scanner 3000.
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Description |
HTA2_091814H_PD4_M1.CEL.pimg Cells grown in NS media
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Data processing |
Normalization was performed with Partek Genomic Suite v. 6.6, applying RMA. All steps were performed according the Partek users manual. the fold_change.txt contains p<0.05 >|1.2|fold data
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Submission date |
Nov 14, 2014 |
Last update date |
Dec 31, 2015 |
Contact name |
Marco Gallo |
E-mail(s) |
marco.gallo@ucalgary.ca
|
Organization name |
University of Calgary
|
Department |
Cumming School of Medicine
|
Street address |
3330 Hospital Dr NW
|
City |
Calgary |
State/province |
AB |
ZIP/Postal code |
T2N 4N1 |
Country |
Canada |
|
|
Platform ID |
GPL17586 |
Series (1) |
GSE63296 |
MLL5 Orchestrates a Cancer Self-Renewal State by Repressing the Histone Variant H3.3 and Globally Reorganizing Chromatin [expression] |
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