NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM155283 Query DataSets for GSM155283
Status Public on Jun 09, 2008
Title SCC induced spontaneously in C3H/He mouse, no irradiation (c_nrs1_30_0h_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description no irradiation
Data processing global median normalization
 
Submission date Jan 15, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (2)
GSE5331 Radiation-induced genes expressed in two murine tumors.
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 6147.8354 124.8606 G 64.0202 6229.8354 4970.0000 5706.3091 148 13.7273254394531 97.3104032874201 82.2083 82.0000 10.2069 124 124.8606
1002 1056.7760 21.4628 G 12.3241 1134.7760 1273.0000 529.0794 127 12.7161874771118 92.0775529123355 77.7667 78.0000 9.3850 124 21.4628
1003 17.3898 0.3532 G 1.0464 95.3898 96.0000 9.7564 59 8.66724491119385 91.163417966665 77.6374 78.0000 8.7756 188 0.3532
1004 33.3014 0.6763 G 1.2250 111.3014 110.0000 11.8826 73 9.64087581634521 90.8602036332849 78.8901 78.0000 8.5735 188 0.6763
1005 170.7089 3.4670 G 2.7317 247.7089 267.0000 75.0367 79 10.0292530059814 90.6778385855893 78.4451 77.0000 9.1186 188 3.4670
1006 11.3250 0.2300 L 0.9921 89.3250 91.0000 11.9319 40 7.13649654388428 90.0387232208168 78.3901 78.0000 8.0258 188 0.2300
1007 6199.8423 125.9168 G 67.1263 6278.8423 4771.0000 5800.7095 148 13.7273254394531 93.5377956810879 79.3667 79.0000 9.6919 124 125.9168
1008 6209.2041 126.1070 G 68.4312 6287.2041 4457.0000 5939.8755 149 13.7736234664917 91.876333881084 78.2333 78.0000 9.2509 124 126.1070
1010 448.7288 9.1135 G 5.7620 525.7288 584.0000 180.1736 120 12.3607740402222 91.2413999194783 77.8992 77.0000 9.4943 123 9.1135
1012 267.5926 5.4347 G 3.7267 348.5926 383.0000 126.7785 81 10.1554126739502 93.5394760201752 80.3791 81.0000 8.3596 188 5.4347
1013 20.2826 0.4119 G 1.0821 98.2826 98.0000 11.4240 46 7.65303993225098 90.8216840673186 78.3571 78.0000 8.5478 188 0.4119
1014 6055.5000 122.9853 G 65.5923 6135.5000 4532.0000 5748.6641 150 13.8197660446167 93.5399749991596 79.3243 80.0000 9.0266 115 122.9853
1015 6144.9165 124.8013 G 64.5473 6226.9165 4400.0000 5719.8794 146 13.6342573165894 96.4706382958605 81.6833 82.0000 9.6471 124 124.8013
1017 20.6406 0.4192 G 1.0873 101.6406 102.0000 10.3053 64 9.02703380584717 93.4821975893744 80.6409 81.0000 8.3215 187 0.4192
1018 18.5128 0.3760 G 1.0611 98.5128 100.0000 10.8199 78 9.96557521820068 92.83850286508 79.2917 80.0000 8.5590 124 0.3760
1019 100.4935 2.0410 G 1.9207 180.4935 186.0000 39.0303 77 9.90148735046387 93.9749946901671 79.8132 80.0000 9.3167 188 2.0410
1020 15.3396 0.3115 G 1.0303 95.3396 94.0000 10.9664 53 8.21472454071045 92.5330346729854 80.6429 80.0000 8.3554 188 0.3115
1021 5935.6733 120.5516 G 64.8326 6015.6733 3746.0000 5725.8564 152 13.9115924835205 92.7877908215104 80.4333 80.0000 8.5252 124 120.5516
1022 6244.3682 126.8211 G 69.0789 6322.3682 3810.0000 6005.9668 165 14.4942932128906 91.5238441087517 79.3833 78.0000 9.0159 124 126.8211
1024 13.6154 0.2765 G 1.0113 91.6154 91.0000 11.5861 65 9.09728336334229 90.590101854778 78.0360 78.0000 8.3934 115 0.2765

Total number of rows: 36227

Table truncated, full table size 4543 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap