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Sample GSM155292 Query DataSets for GSM155292
Status Public on Mar 23, 2015
Title SCC induced spontaneously in C3H/He mouse, 20 days after carbon-ion irradiation at 30Gy (c_nrs1_30_d20_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 20days after carbon-ion irradiation at 30Gy
Data processing global median normalization
 
Submission date Jan 15, 2007
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 7018.2837 133.0831 G 74.9283 7100.2837 3232.0000 6817.5088 143 13.4934520721436 94.7610228037785 82.6583 82.0000 8.5073 124 133.0831
1002 728.7903 13.8196 G 8.5960 810.7903 894.0000 386.1407 126 12.6660251617432 94.3217265349304 82.5750 82.0000 8.2145 124 13.8196
1003 13.3333 0.2528 G 1.0115 93.3333 93.0000 12.5105 69 9.37302112579346 92.2730427813789 80.2667 80.0000 8.1820 124 0.2528
1004 24.5441 0.4654 G 1.1261 105.5441 105.0000 15.1604 68 9.30485343933105 93.7254476360418 81.3167 81.0000 8.4836 186 0.4654
1005 353.6342 6.7057 G 4.7103 432.6342 477.0000 162.8837 82 10.2179079055786 91.8494563133294 79.5165 79.0000 8.5663 188 6.7057
1006 12.3256 0.2337 L 0.9761 91.3256 95.0000 11.0973 43 7.3992772102356 93.5572390659768 79.9066 79.0000 9.7048 188 0.2337
1007 7209.2607 136.7044 G 76.8225 7291.2607 4772.0000 6918.7544 140 13.3511619567871 94.9105295972679 81.9500 82.0000 8.6070 124 136.7044
1008 7337.2358 139.1311 G 77.3596 7418.2358 5918.0000 6942.9121 142 13.4461898803711 95.8929354033409 81.1500 81.0000 9.9286 124 139.1311
1010 403.3607 7.6487 G 5.2184 482.3607 563.0000 181.3054 124 12.5650987625122 92.4345124772622 79.4750 79.0000 8.9563 124 7.6487
1012 195.7229 3.7114 G 2.9958 274.7229 298.0000 83.8450 83 10.2800235748291 91.7021359735419 80.0165 79.0000 8.4681 188 3.7114
1013 14.8148 0.2809 G 1.0285 95.8148 97.0000 11.7317 54 8.29185962677002 93.1580561116043 81.0275 81.0000 8.1054 188 0.2809
1014 7186.8882 136.2802 G 77.2891 7268.8882 4393.0000 6960.5767 145 13.5874843597412 94.0479996872792 82.0087 82.0000 8.0320 119 136.2802
1015 7344.4131 139.2672 G 79.6621 7424.4131 4955.0000 6981.7988 140 13.3511619567871 93.1988100144127 80.1250 80.0000 8.7992 124 139.2672
1017 40.2911 0.7640 G 1.2899 117.2911 118.0000 12.9607 79 10.0292530059814 90.9306337755797 77.6813 77.0000 9.2871 188 0.7640
1018 21.7681 0.4128 G 1.0905 100.7681 100.0000 10.8148 69 9.37302112579346 92.4078562795489 79.5165 79.0000 8.9386 188 0.4128
1019 50.8985 0.9652 G 1.3968 131.8985 131.0000 16.8954 69 9.37302112579346 94.429556541442 80.8556 81.0000 8.9530 186 0.9652
1020 11.2683 0.2137 L 0.9714 91.2683 95.0000 9.7055 41 7.22515201568604 93.9526798083896 80.2081 80.0000 9.3018 179 0.2137
1021 7669.3335 145.4285 G 80.8338 7750.3335 6576.0000 7028.0483 134 13.0619335174561 95.8798050486576 82.5043 81.0000 9.9199 121 145.4285
1022 7812.8462 148.1498 G 84.0403 7892.8462 6387.0000 7082.6587 145 13.5874843597412 93.9174410196703 81.0756 80.0000 9.2783 123 148.1498
1024 14.7747 0.2802 G 1.0190 91.7747 92.0000 11.0175 71 9.50789165496826 90.0667278138629 78.5895 77.0000 8.7111 97 0.2802

Total number of rows: 36227

Table truncated, full table size 4547 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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