NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM155406 Query DataSets for GSM155406
Status Public on Mar 23, 2015
Title SCC induced spontaneously in C3H/He mouse, 5 days after carbon-ion irradiation at 30Gy (c_scc7_30_d5_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 5days after carbon-ion irradiation at 30Gy
Data processing global median normalization
 
Submission date Jan 15, 2007
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 6953.6738 121.5308 G 73.1163 7035.6738 5630.0000 6546.1519 140 13.3511619567871 96.2257679917007 81.7000 82.0000 9.4838 124 121.5308
1002 288.7193 5.0460 G 3.8897 370.7193 402.0000 120.3890 116 12.1530151367188 95.3070257137395 81.5098 82.0000 8.8714 106 5.0460
1003 12.1538 0.2124 L 0.9843 91.1538 91.0000 11.7747 78 9.96557521820068 92.6051237204339 78.3167 79.0000 9.0701 124 0.2124
1004 21.1364 0.3694 G 1.0660 102.1364 103.0000 14.1869 66 9.16699600219727 95.8133005718278 81.0824 81.0000 9.8755 188 0.3694
1005 12.7805 0.2234 L 0.9939 93.7805 97.0000 12.2206 41 7.22515201568604 94.3602521126435 80.2527 81.0000 8.9068 188 0.2234
1006 15.1739 0.2652 G 1.0120 96.1739 97.0000 9.9221 46 7.65303993225098 95.0340841679212 81.3956 81.0000 9.3561 188 0.2652
1007 6834.6094 119.4499 G 74.0460 6914.6094 3482.0000 6845.8931 148 13.7273254394531 93.3826119551695 80.5500 80.0000 8.9217 124 119.4499
1008 6765.1016 118.2351 G 71.8250 6846.1016 3421.0000 6768.7661 150 13.8197660446167 95.3164299420718 80.2000 81.0000 9.5443 124 118.2351
1010 217.4144 3.7998 G 3.1753 298.4144 327.0000 86.4290 113 11.9948348999023 93.9805408960823 80.6167 81.0000 8.6537 124 3.7998
1012 293.5060 5.1297 G 3.9160 375.5060 400.0000 129.6289 83 10.2800235748291 95.8912040033311 82.6923 82.0000 9.2608 188 5.1297
1013 21.5323 0.3763 G 1.0903 100.5323 100.0000 11.4070 62 8.88486671447754 92.2071223977539 79.3901 79.0000 8.8048 188 0.3763
1014 8522.0527 148.9416 G 91.2905 8603.0527 6927.0000 7859.9868 155 14.04820728302 94.2382227223214 81.7788 81.0000 8.8255 117 148.9416
1015 8833.3877 154.3829 G 95.4332 8913.3877 8218.0000 7807.9443 149 13.7736234664917 93.3992509804041 81.5667 80.0000 8.9328 124 154.3829
1017 58.6098 1.0243 G 1.4802 137.6098 139.0000 15.8643 82 10.2179079055786 92.9654489702646 78.7912 79.0000 9.3103 188 1.0243
1018 16.6234 0.2905 G 1.0376 97.6234 99.0000 12.4212 77 9.90148735046387 94.082612406957 79.6204 81.0000 8.7217 112 0.2905
1019 47.5513 0.8311 G 1.3690 127.5513 128.0000 17.3498 78 9.96557521820068 93.1691914591853 79.9379 80.0000 8.7795 151 0.8311
1020 11.2333 0.1963 L 0.9746 88.2333 89.0000 10.1752 90 10.7047443389893 90.5350112811774 77.5061 77.0000 9.0233 170 0.1963
1021 8942.9932 156.2985 G 97.3908 9021.9932 7238.0000 8065.2695 152 13.9115924835205 92.6370017130154 80.1197 79.0000 9.0913 121 156.2985
1022 8971.4971 156.7967 G 97.6428 9051.4971 7491.0000 8143.0059 175 14.9270534515381 92.7000617741093 80.0421 80.0000 8.4667 222 156.7967
1024 14.1392 0.2471 G 1.0126 95.1392 96.0000 11.6116 79 10.0292530059814 93.9547805891461 80.7222 81.0000 8.6365 112 0.2471

Total number of rows: 36227

Table truncated, full table size 4553 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap