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Sample GSM155407 Query DataSets for GSM155407
Status Public on Mar 23, 2015
Title SCC induced spontaneously in C3H/He mouse, 42 days after carbon-ion irradiation at 30Gy (c_scc7_30_d42_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 42days after carbon-ion irradiation at 30Gy
Data processing global median normalization
 
Submission date Jan 15, 2007
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 5556.4521 107.1886 G 58.8639 5639.4521 3002.0000 5538.0532 159 14.2283201217651 95.8049740998724 81.7750 83.0000 8.5366 124 107.1886
1002 599.4500 11.5639 G 7.3809 678.4500 795.0000 285.1113 122 12.4633550643921 91.9194083099876 79.5250 79.0000 8.6129 124 11.5639
1003 14.1414 0.2728 G 1.0128 93.1414 93.0000 13.2131 101 11.3400707244873 91.9602220057634 79.1340 79.0000 8.6401 202 0.2728
1004 37.8781 0.7307 G 1.2847 116.8781 117.0000 13.5839 82 10.2179079055786 90.9776370634588 78.5747 79.0000 7.9851 180 0.7307
1005 19.5882 0.3779 G 1.0803 98.5882 99.0000 11.7510 51 8.0582389831543 91.2626623352977 79.3516 79.0000 8.1751 188 0.3779
1006 11.2632 0.2173 L 0.9761 89.2632 90.0000 9.4998 38 6.95579624176025 91.4509173534042 78.9945 78.0000 8.9673 188 0.2173
1007 6160.4014 118.8393 G 65.2201 6241.4014 4862.0000 5610.9419 149 13.7736234664917 95.6975683755465 80.5917 81.0000 9.7984 124 118.8393
1008 6276.0137 121.0695 G 67.3699 6357.0137 4794.0000 5759.0898 148 13.7273254394531 94.3598986354149 80.6500 81.0000 8.9066 124 121.0695
1010 457.1774 8.8193 G 5.9579 534.1774 622.0000 211.0456 126 12.6660251617432 89.6580444043919 77.4545 77.0000 8.4387 114 8.8193
1012 391.5465 7.5533 G 5.0878 471.5465 520.0000 195.7577 86 10.4641580581665 92.6818782063382 79.7582 80.0000 8.4546 188 7.5533
1013 25.7647 0.4970 G 1.0675 106.7647 106.0000 12.8682 51 8.0582389831543 100.009915596384 82.2418 81.0000 12.6733 188 0.4970
1014 5782.5532 111.5503 G 61.1532 5863.5532 3751.0000 5533.9448 152 13.9115924835205 95.8829464693185 81.7130 81.0000 9.9220 112 111.5503
1015 5793.4570 111.7606 G 62.4299 5874.4570 3548.0000 5558.5542 153 13.9572792053223 94.0969245816731 82.0000 81.0000 8.7313 123 111.7606
1017 34.0769 0.6574 G 1.2290 114.0769 114.0000 13.4534 78 9.96557521820068 92.821478518242 80.2418 80.0000 8.5477 188 0.6574
1018 21.5588 0.4159 G 1.0809 101.5588 102.0000 10.3588 68 9.30485343933105 93.9617254189519 80.1868 80.0000 9.3078 188 0.4159
1019 72.2838 1.3944 G 1.6458 152.2838 151.0000 29.6176 74 9.70668506622314 92.5263774088421 80.8571 80.0000 8.3509 188 1.3944
1020 14.7027 0.2836 G 1.0118 96.7027 97.0000 12.3745 37 6.86366271972656 95.5771461588454 82.5549 82.0000 9.0514 188 0.2836
1021 6033.5576 116.3924 G 63.7548 6116.5576 4081.0000 5717.1826 149 13.7736234664917 95.9387569226292 82.5700 83.0000 8.6258 104 116.3924
1022 6123.8511 118.1342 G 64.0548 6205.8511 4306.0000 5850.9746 163 14.4061803817749 96.8835328679808 82.7833 82.0000 9.9224 124 118.1342
1024 11.4058 0.2200 L 0.9765 92.4058 95.0000 10.1700 69 9.37302112579346 94.6313191154082 81.7217 81.0000 9.0875 119 0.2200

Total number of rows: 36227

Table truncated, full table size 4545 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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