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Sample GSM155408 Query DataSets for GSM155408
Status Public on Mar 23, 2015
Title SCC induced spontaneously in C3H/He mouse, 42 days after carbon-ion irradiation at 30Gy (c_scc7_30_d42_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 42days after carbon-ion irradiation at 30Gy
Data processing global median normalization
 
Submission date Jan 15, 2007
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 5824.4668 109.6624 G 65.0709 5902.4668 4012.0000 5589.0020 152 13.9115924835205 90.7081972433505 78.9328 78.0000 8.4721 123 109.6624
1002 617.3520 11.6234 G 7.4811 696.3520 778.0000 293.4617 127 12.7161874771118 93.0814251193319 78.9160 79.0000 9.3876 123 11.6234
1003 21.3542 0.4021 G 1.0976 98.3542 96.0000 21.1960 48 7.81764030456543 89.6086303590701 77.3187 77.0000 8.4058 188 0.4021
1004 27.7013 0.5216 G 1.1473 107.7013 108.0000 10.3999 77 9.90148735046387 93.8757625566563 79.9286 80.0000 9.2505 188 0.5216
1005 23.3542 0.4397 G 1.1101 101.3542 101.0000 10.5168 48 7.81764030456543 91.3030456171399 77.9945 78.0000 8.8687 188 0.4397
1006 11.1714 0.2103 L 0.9792 89.1714 89.0000 9.6525 35 6.67558097839355 91.0648790769241 76.8187 78.0000 8.7099 188 0.2103
1007 5785.2358 108.9238 G 63.1611 5863.2358 3313.0000 5742.2339 159 14.2283201217651 92.829864189226 79.1750 78.0000 9.8866 124 108.9238
1008 6134.3936 115.4977 G 66.8144 6213.3936 3885.0000 5857.3965 152 13.9115924835205 92.9948908882693 78.5500 79.0000 9.3299 124 115.4977
1010 490.3158 9.2316 G 6.1109 568.3158 628.0000 187.3541 116 12.1530151367188 92.999952245477 77.7250 78.0000 10.0000 124 9.2316
1012 393.3371 7.4057 G 5.1857 471.3371 518.0000 197.3921 89 10.6451082229614 90.8910699829595 77.8736 78.0000 8.5940 188 7.4057
1013 18.8333 0.3546 G 1.0604 96.8333 95.0000 10.5612 60 8.74038791656494 91.3138424804905 78.0989 78.0000 8.8759 188 0.3546
1014 6145.0674 115.6986 G 67.8176 6224.0674 5126.0000 5737.6099 150 13.8197660446167 91.7765537168392 78.9907 79.0000 8.5177 111 115.6986
1015 6016.8438 113.2845 G 64.8463 6097.8438 4341.0000 5659.3042 149 13.7736234664917 94.0353628882155 80.3136 81.0000 8.6902 122 113.2845
1017 33.0769 0.6228 G 1.2027 110.0769 109.0000 14.6828 78 9.96557521820068 91.5210512105977 77.2308 77.0000 9.6807 188 0.6228
1018 22.0952 0.4160 G 1.1075 100.0952 99.0000 11.3165 84 10.3417663574219 90.3766684616576 78.0500 78.0000 8.2511 124 0.4160
1019 73.7681 1.3889 G 1.6474 151.7681 158.0000 28.5043 69 9.37302112579346 92.1262941569143 77.8626 78.0000 9.4175 188 1.3889
1020 10.6364 0.2003 L 0.9617 90.6364 88.0000 12.9166 33 6.48204469680786 94.2432337809222 79.5934 80.0000 9.4955 188 0.2003
1021 6354.3501 119.6390 G 68.3145 6433.3501 5294.0000 5785.5044 142 13.4461898803711 94.1725011117785 78.4417 79.0000 10.1150 124 119.6390
1022 6414.0625 120.7633 G 68.1582 6494.0625 5010.0000 6034.2666 162 14.3619222640991 95.2792610305933 80.4830 80.0000 10.1862 122 120.7633
1024 15.2286 0.2867 G 1.0005 96.2286 88.0000 36.7253 35 6.67558097839355 96.1834160932809 81.2692 81.0000 10.1223 188 0.2867

Total number of rows: 36227

Table truncated, full table size 4545 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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