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Sample GSM155411 Query DataSets for GSM155411
Status Public on Jun 09, 2008
Title Radiation induced C3H mouse Fibrosarcoma, no irradiation (c_8520_30_0h_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Radiation induced C3H mouse Fibrosarcoma eatablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description no irradiation
Data processing global median normalization
 
Submission date Jan 15, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 15086.6221 129.5938 G 123.1009 15191.6221 5725.0000 17480.2793 174 14.8843431472778 123.407873885743 105.7583 105.0000 12.2719 124 129.5938
1002 1522.5577 13.0787 G 12.9632 1626.5577 2010.0000 838.2662 106 11.617374420166 125.474789863109 104.3039 104.0000 14.3165 187 13.0787
1003 31.8431 0.2735 G 1.1301 131.8431 129.0000 14.4878 51 8.0582389831543 116.667394461872 100.3846 100.0000 11.1116 188 0.2735
1004 59.5890 0.5119 G 1.3583 163.5890 163.0000 21.5514 73 9.64087581634521 120.438474437885 103.5879 104.0000 10.9590 188 0.5119
1005 62.2133 0.5344 G 1.3864 166.2133 167.0000 20.2861 75 9.77204990386963 119.885750811227 105.1978 104.0000 10.5905 188 0.5344
1006 15.5800 0.1338 L 0.9812 117.5800 120.0000 15.0640 50 7.97884559631348 119.830438053091 101.6914 102.0000 11.8870 168 0.1338
1007 14407.3408 123.7588 G 119.6063 14513.3408 3587.0000 17021.1172 187 15.4303531646729 121.342580401493 107.2091 106.0000 10.2284 114 123.7588
1008 13690.8232 117.6039 G 107.8979 13798.8232 2858.0000 16529.5723 166 14.5381488800049 127.887779112928 109.0583 108.0000 13.2585 124 117.6039
1010 465.6552 4.0000 G 4.4283 573.6552 672.0000 227.9696 87 10.5248203277588 129.542753536889 109.3556 108.0000 14.3618 186 4.0000
1012 713.1905 6.1263 G 6.0655 824.1905 977.0000 325.3063 84 10.3417663574219 135.881241343083 113.8407 111.0000 16.5875 188 6.1263
1013 47.4918 0.4080 G 1.2441 153.4918 156.0000 16.9576 61 8.81292343139648 123.373984122332 107.0385 106.0000 11.5827 188 0.4080
1014 13479.9707 115.7927 G 112.8759 13583.9707 3068.0000 16092.8408 170 14.7122640609741 120.344344361665 104.8250 104.0000 10.8962 124 115.7927
1015 13571.4375 116.5784 G 109.9656 13679.4375 2406.0000 16691.9746 171 14.7554721832275 124.397478042142 108.3750 108.0000 10.9317 124 116.5784
1017 121.6933 1.0453 G 1.8950 222.6933 225.0000 63.0585 75 9.77204990386963 117.518347074518 101.4438 101.0000 11.0122 184 1.0453
1018 42.7857 0.3675 G 1.2165 148.7857 150.0000 14.6418 56 8.444016456604 122.304909276115 106.2308 106.0000 10.8699 188 0.3675
1019 90.0513 0.7735 G 1.6145 193.0513 200.0000 31.9217 78 9.96557521820068 119.569804583154 103.9615 103.0000 11.0465 188 0.7735
1020 44.1714 0.3794 G 1.2259 147.1714 147.0000 15.9230 70 9.44069766998291 120.046928789527 104.6333 103.0000 11.3646 186 0.3794
1021 13200.4453 113.3916 G 111.2607 13303.4453 3625.0000 15497.1494 168 14.6254653930664 119.570001740363 103.9333 103.0000 11.0467 124 113.3916
1022 13214.1816 113.5096 G 110.0723 13320.1816 3092.0000 15956.4180 162 14.3619222640991 121.012992500381 104.9583 106.0000 10.0087 124 113.5096
1024 25.5294 0.2193 G 1.0676 129.5294 127.0000 10.1775 51 8.0582389831543 121.327233686665 104.5000 104.0000 11.5515 188 0.2193

Total number of rows: 36227

Table truncated, full table size 4591 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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