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Sample GSM155417 Query DataSets for GSM155417
Status Public on Jun 09, 2008
Title Radiation induced C3H mouse Fibrosarcoma, 3 days after carbon-ion irradiation at 30Gy (c_8520_30_d3_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Radiation induced C3H mouse Fibrosarcoma eatablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 3days after carbon-ion irradiation at 30Gy
Data processing global median normalization
 
Submission date Jan 15, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 13870.5713 107.4829 G 158.4141 13944.5713 3382.0000 16581.2520 191 15.5945100784302 88.0260863576491 75.0750 74.0000 9.3507 124 107.4829
1002 1816.0560 14.0726 G 20.7017 1892.0560 2373.0000 1145.5712 109 11.7806243896484 91.3960397535653 77.1131 76.0000 10.2640 174 14.0726
1003 22.9333 0.1777 G 1.1067 97.9333 97.0000 11.7727 60 8.74038791656494 88.4888948920963 75.5909 75.0000 8.9926 182 0.1777
1004 63.1558 0.4894 G 1.5331 140.1558 141.0000 23.7257 77 9.90148735046387 91.4182717828739 77.1703 77.0000 9.6122 188 0.4894
1005 34.5000 0.2673 G 1.2198 110.5000 111.0000 11.2496 66 9.16699600219727 90.5900202359868 77.4341 76.0000 9.7267 188 0.2673
1006 16.2000 0.1255 L 0.8297 95.2000 96.0000 11.0977 30 6.18038702011108 114.746735802471 81.6961 79.0000 23.8312 187 0.1255
1007 14834.1035 114.9492 G 155.2380 14915.1035 2777.0000 17621.1191 185 15.3476161956787 96.0789614294774 81.1667 81.0000 10.0526 124 114.9492
1008 12795.6953 99.1537 G 133.4513 12877.6953 2097.0000 16191.3896 176 14.9696416854858 96.4973211343508 83.1078 82.0000 9.6649 106 99.1537
1010 426.4419 3.3045 G 5.1580 506.4419 582.0000 210.3641 86 10.4641580581665 98.1859588380674 80.7692 80.0000 12.1240 188 3.3045
1012 477.3690 3.6991 G 5.6671 560.3690 658.0000 256.8585 84 10.3417663574219 98.8806154267117 82.8462 83.0000 10.5871 188 3.6991
1013 37.2034 0.2883 G 1.2381 116.2034 114.0000 10.3691 59 8.66724491119385 93.857296349435 79.8791 79.0000 9.9049 188 0.2883
1014 12955.2900 100.3904 G 130.4556 13039.2900 2196.0000 16360.4707 171 14.7554721832275 99.9519637089077 83.9333 84.0000 10.6346 124 100.3904
1015 14110.8730 109.3449 G 144.2758 14193.8730 2848.0000 17285.3438 167 14.5818719863892 98.3801669674518 82.6833 83.0000 10.2534 124 109.3449
1017 141.2329 1.0944 G 2.0166 221.2329 231.0000 55.1684 73 9.64087581634521 109.703214978556 83.5659 80.0000 19.8021 188 1.0944
1018 25.8750 0.2005 G 1.1412 104.8750 106.0000 10.4250 56 8.444016456604 91.8984507042842 79.5110 79.0000 8.5990 188 0.2005
1019 71.5405 0.5544 G 1.6133 150.5405 153.0000 29.3912 74 9.70668506622314 93.3111769346658 78.5604 79.0000 9.5408 188 0.5544
1020 27.9692 0.2167 G 1.1501 105.9692 104.0000 11.9602 65 9.09728336334229 92.1403298266286 78.0440 78.0000 9.4269 188 0.2167
1021 15694.4648 121.6162 G 168.2562 15774.4648 6980.0000 16797.2129 146 13.6342573165894 93.7526710291148 79.9945 80.0000 9.1684 188 121.6162
1022 12694.5996 98.3703 G 142.3315 12772.5996 2549.0000 15586.3467 172 14.7985544204712 89.738391440588 78.1000 78.0000 7.8256 124 98.3703
1024 2.7841 0.0216 L 0.8934 80.7841 79.0000 10.3753 88 10.5851345062256 90.4225424805092 76.6101 78.0000 8.2817 226 0.0216

Total number of rows: 36227

Table truncated, full table size 4588 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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