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Sample GSM155421 Query DataSets for GSM155421
Status Public on Mar 23, 2015
Title Radiation induced C3H mouse Fibrosarcoma, 20 days after carbon-ion irradiation at 30Gy (c_8520_30_d20_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Radiation induced C3H mouse Fibrosarcoma eatablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 20days after carbon-ion irradiation at 30Gy
Data processing global median normalization
 
Submission date Jan 15, 2007
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 23536.5723 221.3647 G 158.5671 23623.5723 13096.0000 23472.3672 156 14.093451499939 148.981570561244 91.9407 87.0000 41.3210 122 221.3647
1002 2882.6194 27.1114 G 29.9081 2967.6194 3705.0000 1859.0667 115 12.1005182266235 99.2247240016686 84.3220 85.0000 9.4832 122 27.1114
1003 25.1778 0.2368 L 0.9584 109.1778 107.0000 16.6150 45 7.56939744949341 113.915779030781 87.3778 84.0000 19.9439 186 0.2368
1004 73.7765 0.6939 G 1.6166 155.7765 155.0000 30.7898 85 10.4031419754028 96.3592600835058 82.9396 82.0000 9.5728 188 0.6939
1005 71.3214 0.6708 G 1.6043 154.3214 155.0000 28.7390 84 10.3417663574219 96.1914010869388 83.4011 83.0000 8.7943 188 0.6708
1006 13.0556 0.1228 L 0.9915 98.0556 98.0000 11.2882 54 8.29185962677002 98.8949302063341 84.8611 85.0000 9.2633 186 0.1228
1007 17583.7324 165.3774 G 179.9111 17667.7324 4681.0000 20588.5391 206 16.1952877044678 98.202585573724 84.7257 84.0000 9.4684 234 165.3774
1008 18664.7090 175.5441 G 193.2630 18747.7090 5006.0000 21414.1582 174 14.8843431472778 97.0061755039423 83.2941 83.0000 9.3375 106 175.5441
1010 623.2673 5.8619 G 7.2733 707.2673 810.0000 298.9163 103 11.4517974853516 97.2415856116395 83.8956 84.0000 8.8277 188 5.8619
1012 711.6863 6.6935 G 8.3831 792.6863 943.0000 368.1716 104 11.5072546005249 94.5571223590551 82.1813 81.0000 9.0381 188 6.6935
1013 43.8625 0.4125 G 1.3233 124.8625 127.0000 18.0199 80 10.0925302505493 94.3537338329031 81.3652 81.0000 8.9025 184 0.4125
1014 18341.9297 172.5083 G 189.8633 18424.9297 4435.0000 21526.2402 187 15.4303531646729 97.0431437094949 83.3667 83.0000 9.3621 124 172.5083
1015 17718.2617 166.6427 G 185.5717 17801.2617 3670.0000 20673.7969 182 15.2226667404175 95.9266203263643 83.1333 83.0000 8.6177 124 166.6427
1017 75.7975 0.7129 G 1.6443 155.7975 155.0000 21.2617 79 10.0292530059814 94.7479813590073 80.1374 80.0000 9.8320 188 0.7129
1018 30.7879 0.2896 G 1.1777 111.7879 110.0000 12.4615 66 9.16699600219727 94.9220110684093 81.3646 81.0000 9.2813 187 0.2896
1019 81.1111 0.7629 G 1.7281 163.1111 160.0000 27.9130 81 10.1554126739502 94.3850077220794 81.5220 82.0000 8.2567 188 0.7629
1020 27.1912 0.2557 G 1.1459 108.1912 108.0000 12.8615 68 9.30485343933105 94.4196491847171 82.0055 81.0000 8.9464 187 0.2557
1021 17241.0332 162.1543 G 181.0759 17324.0332 5350.0000 20332.7480 180 15.1387948989868 95.6727568367789 83.8051 83.0000 8.4485 122 162.1543
1022 17657.2148 166.0685 G 179.7146 17741.2148 2619.0000 22325.0000 174 14.8843431472778 98.7188123260601 83.9250 84.0000 9.8125 124 166.0685
1024 18.2857 0.1720 G 1.0527 97.2857 99.0000 11.7884 42 7.3127326965332 92.4159505141022 79.8956 79.0000 8.9440 188 0.1720

Total number of rows: 36227

Table truncated, full table size 4581 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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