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Sample GSM1554347 Query DataSets for GSM1554347
Status Public on Dec 01, 2015
Title HL53-2 Muscle
Sample type RNA
Source name Muscle tissue
Organism Mus musculus
Characteristics tissue: Muscle
genotype/variation: p53 flow/flox
Treatment protocol No treatment was used
Growth protocol Transgenic mice bearing p53 mutation were monitored until tumors were readily observable and/or limb paralysis symptoms appeared
Extracted molecule total RNA
Extraction protocol RNA was extracted using standard Trizol method
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description fresh frozen
Replicate 1
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Nov 25, 2014
Last update date Dec 01, 2015
Contact name Yuning Jackie Tang
Organization name Hospital for Sick Children
Department Program in Developmental Biology
Street address 686 Bay Street
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A4
Country Canada
Platform ID GPL6887
Series (1)
GSE63631 Transcriptome analysis of a novel mouse model of osteosarcoma and soft tissue sarcoma

Data table header descriptions
VALUE quantile normalized
HL53-2 Muscle.Detection Pval

Data table
ID_REF VALUE HL53-2 Muscle.Detection Pval
ILMN_2417611 86.87138 0.3461539
ILMN_2762289 84.326 0.4476496
ILMN_2896528 2942.708 0
ILMN_2721178 937.8825 0
ILMN_2458837 75.95821 0.7681624
ILMN_3033922 587.4275 0
ILMN_3092673 2443.654 0
ILMN_1230777 1002.843 0
ILMN_1246069 2300.16 0
ILMN_1232042 83.61028 0.4679487
ILMN_1243193 565.0858 0
ILMN_2524361 78.33855 0.6784188
ILMN_1242440 83.60767 0.4679487
ILMN_1233188 94.26469 0.150641
ILMN_2543688 207.4051 0
ILMN_1259789 118.6093 0.01602564
ILMN_2816356 78.10103 0.6891026
ILMN_1224596 101.3967 0.06517094
ILMN_1233643 96.77457 0.1111111
ILMN_2808939 129.2301 0.002136752

Total number of rows: 45281

Table truncated, full table size 1344 Kbytes.

Supplementary file Size Download File type/resource
GSM1554347_9341927063_A_Grn.idat.gz 2.1 Mb (ftp)(http) IDAT
Raw data are available on Series record
Processed data included within Sample table
Raw data provided as supplementary file

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