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Sample GSM1554349 Query DataSets for GSM1554349
Status Public on Dec 01, 2015
Title HL94-2 Muscle
Sample type RNA
Source name Muscle tissue
Organism Mus musculus
Characteristics tissue: Muscle
genotype/variation: p53 flow/flox
Treatment protocol No treatment was used
Growth protocol Transgenic mice bearing p53 mutation were monitored until tumors were readily observable and/or limb paralysis symptoms appeared
Extracted molecule total RNA
Extraction protocol RNA was extracted using standard Trizol method
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description fresh frozen
Replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Nov 25, 2014
Last update date Dec 01, 2015
Contact name Yuning Jackie Tang
Organization name Hospital for Sick Children
Department Program in Developmental Biology
Street address 686 Bay Street
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A4
Country Canada
Platform ID GPL6887
Series (1)
GSE63631 Transcriptome analysis of a novel mouse model of osteosarcoma and soft tissue sarcoma

Data table header descriptions
VALUE quantile normalized
HL94-2 Muscle.Detection Pval

Data table
ID_REF VALUE HL94-2 Muscle.Detection Pval
ILMN_2417611 87.81337 0.2040598
ILMN_2762289 81.4686 0.4188034
ILMN_2896528 2386.958 0
ILMN_2721178 801.1165 0
ILMN_2458837 72.18591 0.792735
ILMN_3033922 563.5372 0
ILMN_3092673 2844.09 0
ILMN_1230777 1325.479 0
ILMN_1246069 993.0753 0
ILMN_1232042 71.80462 0.8055556
ILMN_1243193 820.1819 0
ILMN_2524361 79.37727 0.5138889
ILMN_1242440 82.78372 0.3782051
ILMN_1233188 79.271 0.517094
ILMN_2543688 153.0962 0
ILMN_1259789 107.3003 0.02136752
ILMN_2816356 67.75876 0.9038461
ILMN_1224596 93.94704 0.09722222
ILMN_1233643 103.0107 0.03632479
ILMN_2808939 119.0318 0.00534188

Total number of rows: 45281

Table truncated, full table size 1348 Kbytes.

Supplementary file Size Download File type/resource
GSM1554349_9341927063_B_Grn.idat.gz 2.1 Mb (ftp)(http) IDAT
Raw data are available on Series record
Processed data included within Sample table
Raw data provided as supplementary file

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