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Sample GSM1554351 Query DataSets for GSM1554351
Status Public on Dec 01, 2015
Title HL49-A Bone Marrow
Sample type RNA
Source name Bone Marrow tissue
Organism Mus musculus
Characteristics tissue: Bone Marrow
genotype/variation: p53 flow/flox
Treatment protocol No treatment was used
Growth protocol Transgenic mice bearing p53 mutation were monitored until tumors were readily observable and/or limb paralysis symptoms appeared
Extracted molecule total RNA
Extraction protocol RNA was extracted using standard Trizol method
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description fresh frozen
Replicate 1
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Nov 25, 2014
Last update date Dec 01, 2015
Contact name Yuning Jackie Tang
Organization name Hospital for Sick Children
Department Program in Developmental Biology
Street address 686 Bay Street
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A4
Country Canada
Platform ID GPL6887
Series (1)
GSE63631 Transcriptome analysis of a novel mouse model of osteosarcoma and soft tissue sarcoma

Data table header descriptions
VALUE quantile normalized
HL49-A Bone Marrow.Detection Pval

Data table
ID_REF VALUE HL49-A Bone Marrow.Detection Pval
ILMN_2417611 78.84627 0.5555556
ILMN_2762289 93.7678 0.1047009
ILMN_2896528 1251.692 0
ILMN_2721178 407.8539 0
ILMN_2458837 77.36434 0.6089743
ILMN_3033922 305.3157 0
ILMN_3092673 1808.102 0
ILMN_1230777 588.639 0
ILMN_1246069 313.8575 0
ILMN_1232042 80.64339 0.4722222
ILMN_1243193 428.7091 0
ILMN_2524361 88.24332 0.2104701
ILMN_1242440 84.23109 0.3376068
ILMN_1233188 72.71941 0.7831197
ILMN_2543688 79.16664 0.5405983
ILMN_1259789 92.37158 0.1217949
ILMN_2816356 68.77745 0.909188
ILMN_1224596 86.43698 0.258547
ILMN_1233643 102.8367 0.03525641
ILMN_2808939 416.1489 0

Total number of rows: 45281

Table truncated, full table size 1340 Kbytes.

Supplementary file Size Download File type/resource
GSM1554351_9341927063_C_Grn.idat.gz 2.1 Mb (ftp)(http) IDAT
Raw data are available on Series record
Processed data included within Sample table
Raw data provided as supplementary file

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