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Sample GSM1554353 Query DataSets for GSM1554353
Status Public on Dec 01, 2015
Title HL53-A Bone Marrow
Sample type RNA
Source name Bone Marrow tissue
Organism Mus musculus
Characteristics tissue: Bone Marrow
genotype/variation: p53 flow/flox
Treatment protocol No treatment was used
Growth protocol Transgenic mice bearing p53 mutation were monitored until tumors were readily observable and/or limb paralysis symptoms appeared
Extracted molecule total RNA
Extraction protocol RNA was extracted using standard Trizol method
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description fresh frozen
Replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Nov 25, 2014
Last update date Dec 01, 2015
Contact name Yuning Jackie Tang
Organization name Hospital for Sick Children
Department Program in Developmental Biology
Street address 686 Bay Street
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A4
Country Canada
Platform ID GPL6887
Series (1)
GSE63631 Transcriptome analysis of a novel mouse model of osteosarcoma and soft tissue sarcoma

Data table header descriptions
VALUE quantile normalized
HL53-A Bone Marrow.Detection Pval

Data table
ID_REF VALUE HL53-A Bone Marrow.Detection Pval
ILMN_2417611 75.48428 0.7286325
ILMN_2762289 92.37219 0.1474359
ILMN_2896528 913.2473 0
ILMN_2721178 321.6588 0
ILMN_2458837 73.39803 0.7938034
ILMN_3033922 291.3279 0
ILMN_3092673 1667.508 0
ILMN_1230777 530.5895 0
ILMN_1246069 260.9883 0
ILMN_1232042 79.7697 0.5480769
ILMN_1243193 380.9498 0
ILMN_2524361 77.04799 0.659188
ILMN_1242440 86.25439 0.301282
ILMN_1233188 69.28616 0.909188
ILMN_2543688 97.88314 0.0715812
ILMN_1259789 102.9627 0.04380342
ILMN_2816356 77.05144 0.659188
ILMN_1224596 80.36374 0.5235043
ILMN_1233643 90.19517 0.1880342
ILMN_2808939 389.2281 0

Total number of rows: 45281

Table truncated, full table size 1342 Kbytes.

Supplementary file Size Download File type/resource
GSM1554353_9341927063_D_Grn.idat.gz 2.1 Mb (ftp)(http) IDAT
Raw data are available on Series record
Processed data included within Sample table
Raw data provided as supplementary file

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