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Sample GSM1554358 Query DataSets for GSM1554358
Status Public on Dec 01, 2015
Title HL-3 STS
Sample type RNA
Source name Leiomyosarcoma
Organism Mus musculus
Characteristics tissue: Leiomyosarcoma
genotype/variation: p53 flow/flox
Treatment protocol No treatment was used
Growth protocol Transgenic mice bearing p53 mutation were monitored until tumors were readily observable and/or limb paralysis symptoms appeared
Extracted molecule total RNA
Extraction protocol RNA was extracted using standard Trizol method
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description fresh frozen
Replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Nov 25, 2014
Last update date Dec 01, 2015
Contact name Yuning Jackie Tang
Organization name Hospital for Sick Children
Department Program in Developmental Biology
Street address 686 Bay Street
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A4
Country Canada
Platform ID GPL6887
Series (1)
GSE63631 Transcriptome analysis of a novel mouse model of osteosarcoma and soft tissue sarcoma

Data table header descriptions
VALUE quantile normalized
HL-3 STS.Detection Pval

Data table
ID_REF VALUE HL-3 STS.Detection Pval
ILMN_2417611 81.40865 0.5416667
ILMN_2762289 92.12469 0.1837607
ILMN_2896528 3922.834 0
ILMN_2721178 1044.053 0
ILMN_2458837 84.17554 0.4252137
ILMN_3033922 481.3678 0
ILMN_3092673 3266.855 0
ILMN_1230777 1159.091 0
ILMN_1246069 361.5788 0
ILMN_1232042 84.13475 0.4252137
ILMN_1243193 678.3555 0
ILMN_2524361 80.38422 0.5705128
ILMN_1242440 88.91309 0.2617521
ILMN_1233188 496.5495 0
ILMN_2543688 2143.238 0
ILMN_1259789 96.32912 0.1217949
ILMN_2816356 70.78053 0.9081197
ILMN_1224596 93.19129 0.1581197
ILMN_1233643 97.42748 0.1047009
ILMN_2808939 428.3023 0

Total number of rows: 45281

Table truncated, full table size 1331 Kbytes.

Supplementary file Size Download File type/resource
GSM1554358_9341927063_F_Grn.idat.gz 2.1 Mb (ftp)(http) IDAT
Raw data are available on Series record
Processed data included within Sample table
Raw data provided as supplementary file

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