GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1554360 Query DataSets for GSM1554360
Status Public on Dec 01, 2015
Title HL-27 STS
Sample type RNA
Source name Leiomyosarcoma
Organism Mus musculus
Characteristics tissue: Leiomyosarcoma
genotype/variation: p53 flow/flox
Treatment protocol No treatment was used
Growth protocol Transgenic mice bearing p53 mutation were monitored until tumors were readily observable and/or limb paralysis symptoms appeared
Extracted molecule total RNA
Extraction protocol RNA was extracted using standard Trizol method
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description fresh frozen
Replicate 3
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Nov 25, 2014
Last update date Dec 01, 2015
Contact name Yuning Jackie Tang
Organization name Hospital for Sick Children
Department Program in Developmental Biology
Street address 686 Bay Street
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A4
Country Canada
Platform ID GPL6887
Series (1)
GSE63631 Transcriptome analysis of a novel mouse model of osteosarcoma and soft tissue sarcoma

Data table header descriptions
VALUE quantile normalized
HL-27 STS.Detection Pval

Data table
ID_REF VALUE HL-27 STS.Detection Pval
ILMN_2417611 98.25706 0.8087607
ILMN_2762289 111.0144 0.3974359
ILMN_2896528 1907.159 0
ILMN_2721178 598.5627 0
ILMN_2458837 101.8228 0.7008547
ILMN_3033922 715.3759 0
ILMN_3092673 4691.513 0
ILMN_1230777 1506.197 0
ILMN_1246069 783.5766 0
ILMN_1232042 122.8413 0.1613248
ILMN_1243193 607.0145 0
ILMN_2524361 119.4221 0.2008547
ILMN_1242440 107.5598 0.4925214
ILMN_1233188 575.7811 0
ILMN_2543688 3790.629 0
ILMN_1259789 137.393 0.0534188
ILMN_2816356 114.9902 0.3066239
ILMN_1224596 113.3788 0.3333333
ILMN_1233643 126.5686 0.1175214
ILMN_2808939 796.0085 0

Total number of rows: 45281

Table truncated, full table size 1320 Kbytes.

Supplementary file Size Download File type/resource
GSM1554360_9341927094_A_Grn.idat.gz 2.1 Mb (ftp)(http) IDAT
Raw data are available on Series record
Processed data included within Sample table
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap