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Sample GSM1554362 Query DataSets for GSM1554362
Status Public on Dec 01, 2015
Title HL-50 STS
Sample type RNA
Source name Leiomyosarcoma
Organism Mus musculus
Characteristics tissue: Leiomyosarcoma
genotype/variation: p53 flow/flox
Treatment protocol No treatment was used
Growth protocol Transgenic mice bearing p53 mutation were monitored until tumors were readily observable and/or limb paralysis symptoms appeared
Extracted molecule total RNA
Extraction protocol RNA was extracted using standard Trizol method
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description fresh frozen
Replicate 4
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Nov 25, 2014
Last update date Dec 01, 2015
Contact name Yuning Jackie Tang
Organization name Hospital for Sick Children
Department Program in Developmental Biology
Street address 686 Bay Street
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A4
Country Canada
Platform ID GPL6887
Series (1)
GSE63631 Transcriptome analysis of a novel mouse model of osteosarcoma and soft tissue sarcoma

Data table header descriptions
VALUE quantile normalized
HL-50 STS.Detection Pval

Data table
ID_REF VALUE HL-50 STS.Detection Pval
ILMN_2417611 101.4507 0.6292735
ILMN_2762289 112.3788 0.2735043
ILMN_2896528 2596.911 0
ILMN_2721178 832.0006 0
ILMN_2458837 101.6933 0.6207265
ILMN_3033922 714.8878 0
ILMN_3092673 3901.012 0
ILMN_1230777 1638.515 0
ILMN_1246069 565.7865 0
ILMN_1232042 110.4877 0.3333333
ILMN_1243193 821.0035 0
ILMN_2524361 106.0648 0.4732906
ILMN_1242440 122.5737 0.1047009
ILMN_1233188 623.5468 0
ILMN_2543688 2842.134 0
ILMN_1259789 128.5239 0.05448718
ILMN_2816356 104.0948 0.5373932
ILMN_1224596 145.4221 0.01175214
ILMN_1233643 116.7738 0.1794872
ILMN_2808939 760.7071 0

Total number of rows: 45281

Table truncated, full table size 1313 Kbytes.

Supplementary file Size Download File type/resource
GSM1554362_9341927094_B_Grn.idat.gz 2.1 Mb (ftp)(http) IDAT
Raw data are available on Series record
Processed data included within Sample table
Raw data provided as supplementary file

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